View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_low_82 (Length: 297)
Name: NF18993_low_82
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_low_82 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 5e-93; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 22 - 277
Target Start/End: Complemental strand, 52002529 - 52002274
Alignment:
| Q |
22 |
ttgaagataagcaaatgcctaataaagaattttcacttatgatcttggagcaggaccttgtaattatattagagacagtgagaattattgccattgcact |
121 |
Q |
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| T |
52002529 |
ttgaagataagcaaatgcctaagaaagaattttcacatatgatgttggagcaggaccttgtaattatattagagacagtgagaattattgccattgcact |
52002430 |
T |
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| Q |
122 |
atcgcctgttactccgagcttgagttggagaatatatgctcaacttggctattctagggaccaatttgatgcagcaacctgggtatctctctctatcttn |
221 |
Q |
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| T |
52002429 |
atctcctgttactccgagcttgagttggagaatatatgcacaacttggctattccagggaccagtttgatgcagcaacctgggtatctctctctatctta |
52002330 |
T |
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| Q |
222 |
nnnnnnnnnnnnnnnnaattctgttatagtgtttgatttaagttgttttgcattgt |
277 |
Q |
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| T |
52002329 |
cacacacacatacacaaattctgttttagtgtttgatttaagttgttttgcattgt |
52002274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 5174747 - 5174575
Alignment:
| Q |
1 |
tctcacttcttttcgtctgtgttgaagataagcaaatgcctaataaagaattttcacttatgatcttggagcaggaccttgtaattatattagagacagt |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5174747 |
tctcacttcttttcgtttgtgttgaagataagcaaatgcctaataaagaattttcacttatgatcttggagcaggaccttgtaattatattagagacagt |
5174648 |
T |
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| Q |
101 |
gagaattattgccattgcactatcgcctgttactccgagcttgagttggagaatatatgctcaacttggctat |
173 |
Q |
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| T |
5174647 |
gagaattattgccattgcactatcgcctgttactccgagcttgagttggagaatatatgctcaacttggctat |
5174575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 280
Target Start/End: Complemental strand, 5174554 - 5174512
Alignment:
| Q |
238 |
aattctgttatagtgtttgatttaagttgttttgcattgtaga |
280 |
Q |
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| T |
5174554 |
aattctgttatagtgtttgatttaagttgttttgcattgtaga |
5174512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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