View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_low_84 (Length: 291)
Name: NF18993_low_84
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_low_84 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 16 - 275
Target Start/End: Original strand, 576056 - 576315
Alignment:
| Q |
16 |
atagatttggaattattagatgaagttgcacctgaaaagaggcaacaattcatagactttgtagagaagttgcttcagttttgtaatacttcaagcctaa |
115 |
Q |
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| T |
576056 |
atagatttggaattattagatgaagttgcacctgaaaagaggcaacaattcatagactttgtagagaagttgcgtgtgttttgtaatacttcaagcctaa |
576155 |
T |
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| Q |
116 |
aaaagttttctctattttttgaagttggtatggaagcacctagggttaataaatggctaagtatttttgttaaccctaatattgaagaattaaaccttga |
215 |
Q |
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| T |
576156 |
aaaagttttctctattttttgaagttggtatggaagcacctagggttactaaatggctaagtatttttgttaaccctaatattgaagaattaaagcttga |
576255 |
T |
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| Q |
216 |
actttatacagttaaggaaccacttgttctccctgatcaattttttacttctgaaaaatt |
275 |
Q |
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| T |
576256 |
actttatacagttaaggaaccacttgttctctctgatcaattttttacttctgaaaaatt |
576315 |
T |
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