View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18993_low_88 (Length: 282)
Name: NF18993_low_88
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_low_88 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 16 - 265
Target Start/End: Complemental strand, 13025717 - 13025468
Alignment:
| Q |
16 |
atggctaacttacaaattttgaagacaaaactcaaagaagtcgaatcaatgcttgaagatggaataatacgtggtccacattcacatgaagacatagaac |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13025717 |
atggctaacttacaaattttgaagacaaaactcaaagaagtggaatcaatgcttgaagatggaataatacgtggtccacattcacatgaagacatagaac |
13025618 |
T |
|
| Q |
116 |
aaaaacttgcattcatgacaaaccttgcagccactgaatttaaatcatctcacccatcatcaaatccacaacatatgcatcaaattttacaaaggttaga |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13025617 |
aaaaacttgcattcatgacaaaccttgcagccactgaatttaaatcatctaacccatcatcaaatccacaacatatgcatcaaattttacaaaggttaga |
13025518 |
T |
|
| Q |
216 |
atcagcaaggaattcttttaatgaaagggacaaggattctatatcacatt |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13025517 |
atcagcaaggaattcttttaatgaaagggacaaggattctatatcacatt |
13025468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 32 - 265
Target Start/End: Complemental strand, 5981401 - 5981171
Alignment:
| Q |
32 |
ttttgaagacaaaactcaaagaagtcgaatcaatgcttgaagatggaataatacgtggtccacattcacatgaagacatagaacaaaaacttgcattcat |
131 |
Q |
| |
|
||||||| |||||||||||||| |||||||||| || || |||||| |||||| |||| ||||||| ||||| |||||||||||| |||||||||| |
|
|
| T |
5981401 |
ttttgaaagcaaaactcaaagaactcgaatcaattctcactgaaggaatactacgtgatccaaattcacaagaagaaatagaacaaaaatttgcattcat |
5981302 |
T |
|
| Q |
132 |
gacaaaccttgcagccactgaatttaaatcatctcacccatcatcaaatccacaacatatgcatcaaattttacaaaggttagaatcagcaaggaattct |
231 |
Q |
| |
|
| |||||||| | |||||||| |||||||| |||||||||||||||| |||| || | ||| || |||||||| ||||| | ||||||| |
|
|
| T |
5981301 |
gtcaaaccttatacatgctgaatttgaatcatctgacccatcatcaaatcc---acatttgaaccaatgttaccaaaggttcaaatcattgaagaattct |
5981205 |
T |
|
| Q |
232 |
tttaatgaaagggacaaggattctatatcacatt |
265 |
Q |
| |
|
|||||||| || |||||||||||||| ||||||| |
|
|
| T |
5981204 |
tttaatgatagagacaaggattctatttcacatt |
5981171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University