View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_low_9 (Length: 574)
Name: NF18993_low_9
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 16 - 555
Target Start/End: Original strand, 10119132 - 10119687
Alignment:
| Q |
16 |
attagccatacagatttttcattgattgatcattatttttatccaatggtgttctctaagctttgcatattttaagcatgaaaattgttgttcggttgaa |
115 |
Q |
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| T |
10119132 |
attagctatacagatttttcattgattgatcgttatttttctccaatggtgttctctaagctttgcatattttaagcatgaaaattgttgttcggttgaa |
10119231 |
T |
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| Q |
116 |
attggatttccggaactacttgatttggttgaaattgttgaccctccccagttacatcgattgataatacttgctttttgttttgtttaatttgtgggga |
215 |
Q |
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| T |
10119232 |
attggatttccggaactacttgatttggttgaaattgttgaccctcctcagctacatcgattgataatacttgctttttgttttgtttaatttgtgggga |
10119331 |
T |
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| Q |
216 |
aacaatctcttcgcaattattcttagaaatcttacaaagaacttaattatccaattgcatttgcattttacatgcataagaaatcttaaaactattgttg |
315 |
Q |
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| T |
10119332 |
aacaatctcttcgcaattattcttagaaatcttacaaagaactcaattatccaattgcatttgcattttacatgcataagaaatcttaaaactattgttg |
10119431 |
T |
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| Q |
316 |
atatatgtaactaaacatcgaaatgttacgaaactttgtatatacatgcaatataagtgttttagcataagt----------------ctcaaaattcaa |
399 |
Q |
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| T |
10119432 |
atatatgtaactaaacatcgaaatgttacgaaactttgtatatacatgtaatataagtgttttagcataagtcttcgcaaaaactaagctcaaaattcaa |
10119531 |
T |
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| Q |
400 |
tttttcgtatatacactattatttttgcgatttcgcacattttgataaataaatagaaaatcaagacaaaggcgtgattgcttttattaaataatggtgt |
499 |
Q |
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| T |
10119532 |
attttcgtatatacactattatttttgcgattttgcacattttgataaatgaatagaaaatcaagacaaaggcgtgattggttttattaaataatggcgt |
10119631 |
T |
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| Q |
500 |
taaatatatggttcctgtttagggtaggctctgaaaaatgtggtgccatatagggc |
555 |
Q |
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| T |
10119632 |
taaatatatggttcctgtttagggtaggctctgaaaaatgtggtgccatatagggc |
10119687 |
T |
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