View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_low_96 (Length: 271)
Name: NF18993_low_96
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_low_96 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 38927217 - 38927478
Alignment:
| Q |
1 |
gcggtccactaatgcttgcatgaaacatgtactcatcactccacatccaatattaagatgaatcaaatggatttttgtttgtgatgcaacatgttccact |
100 |
Q |
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| T |
38927217 |
gcggtctactaatgcttgcatgaaacatgtactcatcactccacatccaatattaagatgaatcaaatggatttttgtttgtgatgcaacatgttccact |
38927316 |
T |
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| Q |
101 |
atagcttgtacaccagcaaattgcattacttgattgaaaggaattttttgatgacatttaactactatgttagtatctaattccattttatcaatcaatt |
200 |
Q |
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| T |
38927317 |
atagcttgtacaccagcaaattgcattacttgattgaaaggaattttttgatgacatttaactactatgttagtatctaattccattttatcaatcaatt |
38927416 |
T |
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| Q |
201 |
ccgtctccttgtttctctcatttgatctatgcagtttcatctttcctcgtccggtttctctg |
262 |
Q |
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| T |
38927417 |
ccgtctccttgtttctctcatttgatctatgcagtttcatctttcctcgtccggtttctctg |
38927478 |
T |
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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 88 - 156
Target Start/End: Original strand, 44837828 - 44837896
Alignment:
| Q |
88 |
aacatgttccactatagcttgtacaccagcaaattgcattacttgattgaaaggaattttttgatgaca |
156 |
Q |
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| T |
44837828 |
aacatgttcaactatagcttgtattccagtaaattgcataacttgattaaaaggaagtttttgatgaca |
44837896 |
T |
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