View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_low_97 (Length: 271)
Name: NF18993_low_97
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_low_97 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 34095536 - 34095277
Alignment:
| Q |
1 |
cctgttgttaatgttattctgattctgattgtgattgttaggcacaatccatccagcaccaacgttagaaccaacaaaaggaacataaccagaaccaacc |
100 |
Q |
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| T |
34095536 |
cctgtttttaatgttattctgattctgattctgattgttaggcacaatccatccagcaccaacgttagaaccaacaaaaggaacataaccagaaccaacc |
34095437 |
T |
|
| Q |
101 |
aaaacagtgttattattgttgttggtggtgttttcattcatcatcatttgttgttgaggaaactgaaatggcccagttggtgaaaatgcaccatacttca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34095436 |
aaaacagtgttattattgttgttggtggtgttttcattcatcatcatttgttgttgaggaaactgaaatggcccagttggtgaaaatgcaccatacttca |
34095337 |
T |
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| Q |
201 |
aaacctgttgttgttgatgaggaagatcaaagtgttttttcatcaatgccgctatcctatgct |
263 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34095336 |
aaacctgtt---gttgatgaggaagatcaaagtgttttttcatcaatgccgctatcctctgct |
34095277 |
T |
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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 12294560 - 12294624
Alignment:
| Q |
138 |
tcatcatcatttgttgttgaggaaactgaaatggcccagttggtgaaaatgcaccatacttcaaa |
202 |
Q |
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||||||||| ||||||||||||||||||||||| | || ||| ||| |||||||||||| ||||| |
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| T |
12294560 |
tcatcatcacttgttgttgaggaaactgaaatgacacatttgatgataatgcaccatacctcaaa |
12294624 |
T |
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