View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_low_98 (Length: 270)
Name: NF18993_low_98
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_low_98 |
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Alignment Details
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 43428776 - 43429026
Alignment:
| Q |
1 |
caacttggtggatgggggaaaagatagaatgagtagaaagagagaatccaaatctcccacgaccagtttggattctggtgactagagaaacaacaagagt |
100 |
Q |
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| T |
43428776 |
caacttggtgaatgggggaaaagatagaatgagtagaaagagagaatccaaatctcccacgaccagtttggattc-ggtgact--cgaaacaacaagagt |
43428872 |
T |
|
| Q |
101 |
aa--nnnnnnnnnccgcttatctccaaattctgatatcgagtgagttggttccttcttcttccatgcattga-nnnnnnnctattcacagttaccgtgtg |
197 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||| |
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| T |
43428873 |
aatttttttttttccgcttatctccaaattctgatatcgagtgagttggttccttcttcttccatgcattgattttttttctattcatagttaacgtgtg |
43428972 |
T |
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| Q |
198 |
tttgtgtatgtatgcatgtatgtatgagctattcattttatttcgtaaccttgt |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43428973 |
tttgtgtatgtatgcatgtatgtatgagctattcattttatttcgtaaccttgt |
43429026 |
T |
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