View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18994_high_3 (Length: 333)
Name: NF18994_high_3
Description: NF18994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18994_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 7449047 - 7448728
Alignment:
| Q |
1 |
ttatgctctactcaactgtgttggatgaacaagagtgagtgaaggttctggtcacgnnnnnnnnnnnnnnnnnnnnnncttgtcaacaaaaagatggaat |
100 |
Q |
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| T |
7449047 |
ttatgctctactcaactgtgttggatgaacaagagtgagtgaaggttctggtcacgagaagaaagaagaaaagaaaaacttgtcaacaaaaagatggaat |
7448948 |
T |
|
| Q |
101 |
ttattggttaatagataaataaataa----------------gttagataaacatgacaccatgatcaataagctaccattccatgtaaacaaagaaaaa |
184 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7448947 |
ttattggttaatagataaataaataaataaataaataaataagttagataaacatgacaccatgatcaataagctaccattccatgtaaacaaagaaaaa |
7448848 |
T |
|
| Q |
185 |
taggtaacccaccatcccatgccactatcatcatcacttgccatttactaacatttttatattatatactctacatatatatacacattatgtgtacttg |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7448847 |
taggtaacccaccatcccatgccactatcatcatcacttgccatttactaacatttttatattatatactctacatatatatacacattatgtgtacttg |
7448748 |
T |
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| Q |
285 |
tgtcgtcaggatcgatataa |
304 |
Q |
| |
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|||||||||| ||||||||| |
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| T |
7448747 |
tgtcgtcagggtcgatataa |
7448728 |
T |
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