View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18994_low_1 (Length: 556)
Name: NF18994_low_1
Description: NF18994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18994_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 45 - 409
Target Start/End: Complemental strand, 39125973 - 39125609
Alignment:
| Q |
45 |
tccgtatcaaccttgagcaacaatccaaatgtgaaggacaacagctcacagccgcagaaagctaactaaatcgtagatcatgcctttcttattgatgtat |
144 |
Q |
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| T |
39125973 |
tccgtatcaaccttgagcaacaatccaaatgtgaaggacaacagctcacagccgcagaaagctaactaaatcgtagatcatgcctttcttattgatgtat |
39125874 |
T |
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| Q |
145 |
atcgacgtcaagagcatatgaaaattatgtatgaataatcaagcatgagatggtatcatataagtaaattgtagatgtagagtttgtcatctgaaaggtt |
244 |
Q |
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| T |
39125873 |
atcgacgtcaagagcatatgaaaattatgtatgaataatcaagcatgagatggtatcatataagtaaattgtagatgtagagtttgtcatctgaaaggtt |
39125774 |
T |
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| Q |
245 |
ccactggttctgattcttcaagagagtttgcttcttgaaaacattcggcagcttctgacattctaccttcagccttgtgaagaataccaagatgatacca |
344 |
Q |
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| T |
39125773 |
ccactggttctgattcttcaagagagtttgcttcttgaaaacattcggcagcttctgacattctaccttcagccttgtgaagaataccaagatgatacca |
39125674 |
T |
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| Q |
345 |
agcagaagcattagagctgttaagccgtagtgcttccttcagatagcttctaatagcaggatttg |
409 |
Q |
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| T |
39125673 |
agcagaagcattagagctgttaagccgtagtgcttccatcagatagcttctaatagcaggatttg |
39125609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 424 - 540
Target Start/End: Complemental strand, 39128876 - 39128760
Alignment:
| Q |
424 |
agtccaaacccaagttgcaatactgtacacataaattttgtaggtttcaactttgaggaaagatccctaataatgtaaaaagagaggtgaggtaccaaat |
523 |
Q |
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| T |
39128876 |
agtccaaacccaagttgcaatactgtacacataaattttgtaggtttcaactttgaggaaagatccctaataatgtaaaaagagaggtgaggtaccaaat |
39128777 |
T |
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| Q |
524 |
tgtatgtaaggcaatag |
540 |
Q |
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| T |
39128776 |
tgtatgtaaggcaatag |
39128760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 308 - 356
Target Start/End: Original strand, 30283817 - 30283865
Alignment:
| Q |
308 |
taccttcagccttgtgaagaataccaagatgataccaagcagaagcatt |
356 |
Q |
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| T |
30283817 |
taccctcagccttgtgaaaaaggccaagattataccaagcagaagcatt |
30283865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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