View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18994_low_3 (Length: 369)
Name: NF18994_low_3
Description: NF18994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18994_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 15 - 354
Target Start/End: Original strand, 23732221 - 23732564
Alignment:
| Q |
15 |
tatgcaaatcaacagaaaataaaaagctcagatgcaattcaaagttgcagcctttcacaaagccctccagccatggcagttccttcctgcttttgatgaa |
114 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
23732221 |
tatgcaaatcagcagaaaataaaaagctcagatgcaattcaaagttgcagcctttcacaaagcccttcagccatggcagtttcttcctgcttttgatgaa |
23732320 |
T |
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| Q |
115 |
agaatttctacagccaaataaaatccatttcacgtacccttaa-----ttgactaannnnnnnatttctttgacccatttcttagtaattgatatcccta |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||| |||||||||||||||||||||||||||||| |
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| T |
23732321 |
agaatttctacagccaaataaaatccatttcacgtacccttaaattaattgactgatttttt-atttctgtgacccatttcttagtaattgatatcccta |
23732419 |
T |
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| Q |
210 |
acctggtttctttcccactgacaccaattgaatcatgagttaacaaatttgaaaatgggttaatttaaaattgagattcaagtcaaatgagattaatcat |
309 |
Q |
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||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
23732420 |
acctgatttctttcccactgacatcaattgaatcatgagttaacaaatttgaaaatgggttaatttaaaattgagattcaagttaaatgagattaatcat |
23732519 |
T |
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| Q |
310 |
ttttctataaatttgtttacttttatataaattccagttgtaatt |
354 |
Q |
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| T |
23732520 |
ttttctataaatttgtttacttttatataaattacagttgtaatt |
23732564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 93 - 350
Target Start/End: Complemental strand, 30266981 - 30266724
Alignment:
| Q |
93 |
gttccttcctgcttttgatgaaagaatttctacagccaaataaaatccatttcacgtacccttaattgactaannnnnnnatttctttgacccatttctt |
192 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||| |
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| T |
30266981 |
gttccttcctgcttttgatgaaagaatttctacagccaaataaaatccatttcacgtacccttaattgactgatttttttatttctgtgacccatttctt |
30266882 |
T |
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| Q |
193 |
agtaattgatatccctaacctggtttctttcccactgacaccaattgaatcatgagttaacaaatttgaaaatgggttaatttaaaattgagattcaagt |
292 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30266881 |
agtaattgatatccctaacctggtttctttcccaccgacaccaattgaatcatgagttaacaaatttgaaaatgggttaatttaaaattgagattcaagt |
30266782 |
T |
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| Q |
293 |
caaatgagattaatcatttttctataaatttgtttacttttatataaattccagttgt |
350 |
Q |
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| T |
30266781 |
caaatgagattaatcatttttctataaatttgtttacttttatataaatttcagttgt |
30266724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 30270048 - 30269974
Alignment:
| Q |
15 |
tatgcaaatcaacagaaaataaaaagctcagatgcaattcaaagttgcagcctttcacaaagccctccagccatg |
89 |
Q |
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| T |
30270048 |
tatgcaaatcagcagaaaatgaaaagctcagatgcaattcaaagttgcagcctttcacaaagccctccagccatg |
30269974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 77 - 163
Target Start/End: Complemental strand, 18094000 - 18093914
Alignment:
| Q |
77 |
ccctccagccatggcagttccttcctgcttttgatgaaagaatttctacagccaaataaaatccatttcacgtacccttaattgact |
163 |
Q |
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| T |
18094000 |
cccttcagccatggcggttccttactaattttgctaaaagaatttctacaaccaaagaaaagccatttcacgtacccttaattgact |
18093914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 257 - 346
Target Start/End: Complemental strand, 18093868 - 18093778
Alignment:
| Q |
257 |
tttgaaaatgggttaatttaaaa-ttgagattcaagtcaaatgagattaatcatttttctataaatttgtttacttttatataaattccag |
346 |
Q |
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|||||||| |||||||||||||| |||| ||||||| ||||||||||| | |||||||| ||||| | || ||| |||||||||||||||| |
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| T |
18093868 |
tttgaaaaggggttaatttaaaaattgaaattcaaggcaaatgagattcaacatttttccataaactagtatacatttatataaattccag |
18093778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 286 - 338
Target Start/End: Original strand, 27752650 - 27752702
Alignment:
| Q |
286 |
ttcaagtcaaatgagattaatcatttttctataaatttgtttacttttatata |
338 |
Q |
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| T |
27752650 |
ttcaagtcaaatgagattcatcatttttctataaatttgtctaattttatata |
27752702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 350
Target Start/End: Complemental strand, 4428325 - 4428296
Alignment:
| Q |
321 |
tttgtttacttttatataaattccagttgt |
350 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
4428325 |
tttgtttacttttatataaattccagttgt |
4428296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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