View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18995_high_1 (Length: 621)
Name: NF18995_high_1
Description: NF18995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18995_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-125; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 222 - 496
Target Start/End: Complemental strand, 43219741 - 43219478
Alignment:
| Q |
222 |
ttaattagaaacatgatcaaagtggtaataattgctcagtatttttgcaaatgtatctgcaatttcataacaagtgttgttttcttgatatatttgtttc |
321 |
Q |
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| T |
43219741 |
ttaattagaaacatgatcaaagtggtaataattgctcagtatttttgcaaatgtatctgtaatttcataacaagtgttgttttcttgatatatttgtttc |
43219642 |
T |
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| Q |
322 |
ttcttctatttaggtcctcatgtgttgtgcctctttaatgaccttcactttgtttatgttttcacttttgtattgaatttaattgtatttgattttgtaa |
421 |
Q |
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| T |
43219641 |
ttcttctatttaggtcctcatgtgtt---------taatgaccttcactttgtttatgttttcacttttgtattgaatttaattgtatttgattttgtaa |
43219551 |
T |
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| Q |
422 |
ttcttaccatcatttgttcatagtaaaattatccttgactctgtcaacattgctcattttcatccttttgtcaat |
496 |
Q |
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| T |
43219550 |
ttc--accatcatttgttcatagtaaaattatccttgactctgtcaacattgctcattttcatccttttgtcaat |
43219478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 43219952 - 43219848
Alignment:
| Q |
19 |
tagggccttttataaggatgtcat-----tttatcaagtgcaactagggtaacttttgttctgcacaagtagacaacagtcctttgcagcttttgataaa |
113 |
Q |
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| T |
43219952 |
tagggccttttataaggatgtcatgtcattttatcaagtgcaactagggtaacttttgttctacacaagtagacaacagttctttgcagcttttgataaa |
43219853 |
T |
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| Q |
114 |
aagag |
118 |
Q |
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| T |
43219852 |
aagag |
43219848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 523 - 584
Target Start/End: Complemental strand, 43219477 - 43219416
Alignment:
| Q |
523 |
tccgtcaatgtcaatttagtttctataatgtacaatgtactatcaattaacacatggtttca |
584 |
Q |
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| T |
43219477 |
tccgtcaatgtcaatttagtttctataatgtacaatgtactatcaattaacacatggtttca |
43219416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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