View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18995_high_13 (Length: 379)
Name: NF18995_high_13
Description: NF18995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18995_high_13 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 19 - 379
Target Start/End: Complemental strand, 54848549 - 54848170
Alignment:
| Q |
19 |
aggaagaaagcagagtaatgaatgattctaaacacgtgtttggaatgacactgagattgtcagaattatggtgaacataataattttgacaaaaactacg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54848549 |
aggaagaaagcagagtaatgaatgattctaaacacgtgtttggaatgacactgagattgtcagaattatggtgaacataataattttgacaaaaactacg |
54848450 |
T |
|
| Q |
119 |
ttttagagcttgaataa-------------------atttgtcaatcaaggtcaatccaaacatgtactgattcttgtgaacatccaaataattttaagc |
199 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54848449 |
ttttagagcttgaataagataacagtgtcacgctaaatttgtcaatcaaggtcaatccaaacatgtactgattcttgtgaacatccaaataattttaagc |
54848350 |
T |
|
| Q |
200 |
attgacgtatgaggtagttaattgagtgcaacttggcgcccttcgacaatgatatggattaaggttgatgaattcctttctatgagaatgtttctttctt |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
54848349 |
attgacgtatgaggtagttaattgagtgcaacttggcgcccttcgacaatgatatggattaaggttgatgaattccttcctatgagaatgtttctttctt |
54848250 |
T |
|
| Q |
300 |
ttctttgcatcaggatgttttggtttcttcaaatcctcaaccgaatgtacatcttccatacaaacaaatgatcttgcttt |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54848249 |
ttctttgcatcaggatgttttggtttcttcaaatcctcaaccgaatgtacatcttccatacaaacaaatgatcttgcttt |
54848170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University