View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18995_high_18 (Length: 305)
Name: NF18995_high_18
Description: NF18995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18995_high_18 |
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Alignment Details
Target: chr6 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 118 - 297
Target Start/End: Complemental strand, 17003651 - 17003470
Alignment:
| Q |
118 |
gatgtataaggtaatgttttgaa-ttaatcaattatcacattattacaacaactgggtcattctgaaaattgtaaaagattacattttttcactgttttt |
216 |
Q |
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| T |
17003651 |
gatgtataaggtaatgttttgaaattaatcaattatcacattattacaacaactgggtcattctgaaaattgtaaaagattacattttttcactgttttt |
17003552 |
T |
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| Q |
217 |
t-gtatatgatcaaatgggtgtgtttgatttgatgtatttgaatcataacaacaattgggtcattttttgtccccttcatct |
297 |
Q |
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| T |
17003551 |
ttgtatatgatcaaatgggtgtgtttgatttgatgtatttgaatcataacaacaattgggtcattttttgtcccctccatct |
17003470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 17002963 - 17002848
Alignment:
| Q |
139 |
aattaatcaattatcacattattacaacaactgggtcattctgaaaattgtaaaagattacat--tttttcactgttttttgtat-atgatcaaatgggt |
235 |
Q |
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| T |
17002963 |
aattaatcaagtatcacattattaaaacaattggatcattctgaaaagtgaaaaaaaataaatcatttttctatgttttttctgtcatgatcaaatgggt |
17002864 |
T |
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| Q |
236 |
gtgtttgatttgatgt |
251 |
Q |
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| T |
17002863 |
gtgtttgatttgatgt |
17002848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 17003748 - 17003706
Alignment:
| Q |
21 |
aaatatcctcaatttttccaaacaagtccaacaacacttgtcc |
63 |
Q |
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| T |
17003748 |
aaatatcctcaatttttccaaactagtccaacaacacttgtcc |
17003706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 141; Significance: 6e-74; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 118 - 282
Target Start/End: Complemental strand, 1188311 - 1188144
Alignment:
| Q |
118 |
gatgtataaggtaatgttttgaa-ttaatcaattatcacattattacaacaactgggtcattctgaaaattgtaaaagattacattttttcactgtt--t |
214 |
Q |
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| T |
1188311 |
gatgtataaggtaatgttttgaaattaatcaattatcacattattacaacaactgggtcattctgaaaactgtaaaagattacattttttcactgttttt |
1188212 |
T |
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| Q |
215 |
tttgtatatgatcaaatgggtgtgtttgatttgatgtatttgaatcataacaacaattgggtcatttt |
282 |
Q |
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| T |
1188211 |
tttgtatatgatcaaatgggtgtgtttgatttgatgtatttgaatcattacaacaattgggtcatttt |
1188144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 251
Target Start/End: Complemental strand, 1188165 - 1188072
Alignment:
| Q |
159 |
attacaacaactgggtcattctgaaaattgtaaaagattacattttttcactgt-tttttgtatatgatcaaatgggtgtgtttgatttgatgt |
251 |
Q |
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| T |
1188165 |
attacaacaattgggtcattttggaaagtgaaaaggtttacattttttttctctgtttttgttcatgatgaaatgggtgtgtttgatttgatgt |
1188072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 1188410 - 1188366
Alignment:
| Q |
19 |
ctaaatatcctcaatttttccaaacaagtccaacaacacttgtcc |
63 |
Q |
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| T |
1188410 |
ctaaatatcctccctttttccaatcaagtccaacaacacttgtcc |
1188366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 251
Target Start/End: Complemental strand, 1187937 - 1187908
Alignment:
| Q |
222 |
atgatcaaatgggtgtgtttgatttgatgt |
251 |
Q |
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| T |
1187937 |
atgatcaaatgggtgtgtttgatttgatgt |
1187908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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