View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18995_high_26 (Length: 248)

Name: NF18995_high_26
Description: NF18995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18995_high_26
NF18995_high_26
[»] chr8 (1 HSPs)
chr8 (2-123)||(2685981-2686103)
[»] chr6 (1 HSPs)
chr6 (2-123)||(870748-870870)
[»] chr4 (1 HSPs)
chr4 (2-123)||(5477211-5477333)
[»] chr2 (1 HSPs)
chr2 (2-123)||(45009405-45009527)
[»] chr5 (2 HSPs)
chr5 (1-123)||(14490486-14490610)
chr5 (3-38)||(21839500-21839535)
[»] chr7 (1 HSPs)
chr7 (2-123)||(277394-277515)
[»] chr1 (1 HSPs)
chr1 (184-224)||(31909254-31909294)


Alignment Details
Target: chr8 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 2 - 123
Target Start/End: Original strand, 2685981 - 2686103
Alignment:
Q  2 tcactattcttattactcaatttcataaaaccctaaaactccctttttccccaaatgaaa-cttaactctaaattcatcaaatttctacatgcatgaggg 100  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  2685981 tcactattcttattactcaatttcataaaaccttaaaattcccttttcccccaaatgaaaacctaactctaaattcatcaaatttctacatgcatgaggg 2686080  T
Q  101 aaaggaaaagggaaacccacctt 123  Q
    |||||||||||||||||||||||    
T  2686081 aaaggaaaagggaaacccacctt 2686103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 2 - 123
Target Start/End: Complemental strand, 870870 - 870748
Alignment:
Q  2 tcactattcttattactcaatttcataaaaccctaaaactccctttttccccaaatgaaa-cttaactctaaattcatcaaatttctacatgcatgaggg 100  Q
    |||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  870870 tcactattcttattactcaatttcataaaaccctaaaattctcttttcccccaaatgaaaacctaactctaaattcatcaaatttctacatgcatgaggg 870771  T
Q  101 aaaggaaaagggaaacccacctt 123  Q
    |||||||||||||||||||||||    
T  870770 aaaggaaaagggaaacccacctt 870748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 2 - 123
Target Start/End: Complemental strand, 5477333 - 5477211
Alignment:
Q  2 tcactattcttattactcaatttcataaaaccctaaaactccctttttccccaaatgaaa-cttaactctaaattcatcaaatttctacatgcatgaggg 100  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  5477333 tcactattcttattactcaatttcataaaaccttaaaattcccttttcccccaaatgaaaacctaactctaaattcatcaaatttctacatgcatgaggg 5477234  T
Q  101 aaaggaaaagggaaacccacctt 123  Q
    |||||||||||||||||||||||    
T  5477233 aaaggaaaagggaaacccacctt 5477211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 2 - 123
Target Start/End: Original strand, 45009405 - 45009527
Alignment:
Q  2 tcactattcttattactcaatttcataaaaccctaaaactccctttttccccaaatgaaa-cttaactctaaattcatcaaatttctacatgcatgaggg 100  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  45009405 tcactattcttattactcaatttcataaaaccttaaaattcccttttcccccaaatgaaaacctaactctaaattcatcaaatttctacatgcatgaggg 45009504  T
Q  101 aaaggaaaagggaaacccacctt 123  Q
    |||||||||||||||||||||||    
T  45009505 aaaggaaaagggaaacccacctt 45009527  T

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Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 14490486 - 14490610
Alignment:
Q  1 ctcactattcttattactcaatttcataaaaccctaaaactccctttttccc-caaatgaaa-cttaactctaaattcatcaaatttctacatgcatgag 98  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||| || ||||||||| | ||||||||||||||| |||||||||||||||||||    
T  14490486 ctcactattcttattactcaatttcataaaaccctaaagttcccttttttcctcaaatgaaaacctaactctaaattcataaaatttctacatgcatgag 14490585  T
Q  99 ggaaaggaaaagggaaacccacctt 123  Q
     ||||||||||||||||||||||||    
T  14490586 cgaaaggaaaagggaaacccacctt 14490610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 38
Target Start/End: Complemental strand, 21839535 - 21839500
Alignment:
Q  3 cactattcttattactcaatttcataaaaccctaaa 38  Q
    ||||||||||||||||||||| ||||||||||||||    
T  21839535 cactattcttattactcaattccataaaaccctaaa 21839500  T

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Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 2 - 123
Target Start/End: Original strand, 277394 - 277515
Alignment:
Q  2 tcactattcttattactcaatttcataaaaccctaaaactccctttttccccaaatgaaa-cttaactctaaattcatcaaatttctacatgcatgaggg 100  Q
    |||||||||||| ||||||||||||||||||||||||| |  ||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  277394 tcactattcttactactcaatttcataaaaccctaaaattgtcttttcccccaaatgaaaacctaactctaaattcatcaaatttctacatgcatgaggg 277493  T
Q  101 aaaggaaaagggaaacccacctt 123  Q
    ||||||||| |||||||||||||    
T  277494 aaaggaaaa-ggaaacccacctt 277515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 31909254 - 31909294
Alignment:
Q  184 tctccaatctttccccaattcttgaaaccctaatctccatt 224  Q
    |||||||||||| |||||||||||||||| || ||||||||    
T  31909254 tctccaatcttttcccaattcttgaaaccttattctccatt 31909294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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