View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18995_high_29 (Length: 240)
Name: NF18995_high_29
Description: NF18995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18995_high_29 |
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Alignment Details
Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 17 - 233
Target Start/End: Original strand, 47685539 - 47685755
Alignment:
| Q |
17 |
atacctgcacttgctaggtagatgctctagctaatccttagtggctgccttatgtctgctaaatattctcattcatcatctatttcttccagttgcactg |
116 |
Q |
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| T |
47685539 |
atacctgcacttgctaggtagatgctctagctaatccttagtggctgccttatgtctgctaaatattctcattcatcatctatttcttccagttgcactg |
47685638 |
T |
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| Q |
117 |
tgcccactctataactcacccatccctgcctttggatggattcannnnnnnnnnnnnnnnnactttcaaaactgctgctgctcctacctgagaatgtata |
216 |
Q |
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| T |
47685639 |
tgcccactctataactcacccatccctgcctttggatggattcatttttgtttttgtttttactttcaaaactgctgctgctcctacctgagaatgtata |
47685738 |
T |
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| Q |
217 |
tgacgtgtgcctctctg |
233 |
Q |
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||||||||||||||||| |
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| T |
47685739 |
tgacgtgtgcctctctg |
47685755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 35 - 233
Target Start/End: Original strand, 12282067 - 12282265
Alignment:
| Q |
35 |
tagatgctctagctaatccttagtggctgccttatgtctgctaaatattctcattcatcatctatttcttccagttgcactgtgcccactctataactca |
134 |
Q |
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| T |
12282067 |
tagatgctctagctaatccttagtggccggcttatgtctgttaaatattctcat---tcatctattgcttccaattgcactgtgcccactctataactca |
12282163 |
T |
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| Q |
135 |
cccatccctgcctttggatggattcannnnnnnnnnnnnnnnnactttcaaaa---ctgctgctgctcctacctgagaatgtatatgacgtgtgcctctc |
231 |
Q |
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| T |
12282164 |
atcatccctgtctttggttggattcatttttgtttttgtttttactttcaaaactgctgctgctgctcctacctaagaatgtatatgacatgtgcctctc |
12282263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 93
Target Start/End: Original strand, 10561914 - 10561950
Alignment:
| Q |
57 |
gtggctgccttatgtctgctaaatattctcattcatc |
93 |
Q |
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| T |
10561914 |
gtggctgccttatatctgctaaatattctcattcatc |
10561950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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