View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18995_high_3 (Length: 553)

Name: NF18995_high_3
Description: NF18995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18995_high_3
NF18995_high_3
[»] chr7 (3 HSPs)
chr7 (16-538)||(36675905-36676425)
chr7 (56-119)||(31741151-31741214)
chr7 (56-98)||(6220185-6220227)
[»] chr4 (5 HSPs)
chr4 (57-119)||(22364472-22364534)
chr4 (57-116)||(32290318-32290377)
chr4 (47-132)||(42179136-42179222)
chr4 (56-119)||(50498318-50498381)
chr4 (56-119)||(14786737-14786800)
[»] chr1 (7 HSPs)
chr1 (56-119)||(13276475-13276538)
chr1 (56-119)||(46845667-46845730)
chr1 (56-119)||(526910-526973)
chr1 (56-119)||(15066021-15066084)
chr1 (56-119)||(40314200-40314263)
chr1 (60-119)||(39858459-39858518)
chr1 (58-119)||(49430485-49430546)
[»] chr5 (3 HSPs)
chr5 (56-117)||(35906102-35906163)
chr5 (56-119)||(15285437-15285500)
chr5 (57-119)||(8076374-8076436)
[»] chr6 (1 HSPs)
chr6 (56-119)||(23916080-23916143)
[»] chr2 (4 HSPs)
chr2 (56-119)||(3121718-3121781)
chr2 (47-119)||(14945737-14945811)
chr2 (56-117)||(24475714-24475775)
chr2 (56-119)||(33300089-33300152)
[»] chr8 (3 HSPs)
chr8 (56-106)||(2599639-2599689)
chr8 (56-119)||(28898103-28898166)
chr8 (57-119)||(35200675-35200737)
[»] chr3 (1 HSPs)
chr3 (56-119)||(23004873-23004936)
[»] scaffold0005 (1 HSPs)
scaffold0005 (56-119)||(52930-52993)


Alignment Details
Target: chr7 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 16 - 538
Target Start/End: Original strand, 36675905 - 36676425
Alignment:
Q  16 tcatatggccctacacacataaaaaattcacactcacattcacactctcacatgggagtggtacataatatgtatggaaaaaagggtgttcttcaaacat 115  Q
    |||| |||||||||||| ||||||||     ||| |||||||||||||||||||| |||| |||||| ||| |||||| |||||||||||  ||||| ||    
T  36675905 tcatgtggccctacacatataaaaaa-----acttacattcacactctcacatggaagtgatacatagtatatatggagaaaagggtgttgatcaaatat 36675999  T
Q  116 tatctaataaaaacaatcccgtcggtgcattcattgtcatcatattctgtgatttttgttacttttctcaaactgcnnnnnnnnagtactaagttaataa 215  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||    
T  36676000 tatctaataaaaacaatcccgttggtgcattcattgtcatcatattctgtgatttttgttacttttctcaaactgtttttttttagtactaagttaataa 36676099  T
Q  216 atatttagtaaatgcgtaatctatctagtattta---tattattcnnnnnnnntctagtatctacactagtacatttttctttgtaaagcaaagataatt 312  Q
    ||||||||||||||||||||||||||||||||||   ||||||||        |||||||||||||||||||||||||||||||||||||||||||||||    
T  36676100 atatttagtaaatgcgtaatctatctagtatttacactattattcaaaaaaaatctagtatctacactagtacatttttctttgtaaagcaaagataatt 36676199  T
Q  313 tgataagtgctcagaagcgtgattgtctttataaagcaattatttatcagtactatttagtatttacatctaaactaaatgtaccagcgcgtgannnnnn 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  36676200 tgataagtgctcagaagcgtgattgtctttataaagcaattatttatcagtactatttagtatttacatctaaactaaatgtaccagcgcgtgatttttt 36676299  T
Q  413 nctctctttcaaacatagaataaaactgacaataaaataattaaagggaccaaactttggaagaaacaagaatgataactaagcatatcttacaaatgaa 512  Q
     ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36676300 tctctctttcaaacatggaataaaactgacaataaaataattaaagggaccaaactttggaagaaacaagaatgataactaagcatatcttacaaatgaa 36676399  T
Q  513 acttattgaattctatgccaaatatt 538  Q
    ||||||||||||||||||||||||||    
T  36676400 acttattgaattctatgccaaatatt 36676425  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 31741151 - 31741214
Alignment:
Q  56 cacactctcacatgggagtggtacataatatgtatggaaaaaagggtgttcttcaaacattatc 119  Q
    ||||||||||||||||||||||||||| | ||||| ||||||||| ||||| | ||||||||||    
T  31741151 cacactctcacatgggagtggtacatagtgtgtatagaaaaaaggatgttcatgaaacattatc 31741214  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 56 - 98
Target Start/End: Complemental strand, 6220227 - 6220185
Alignment:
Q  56 cacactctcacatgggagtggtacataatatgtatggaaaaaa 98  Q
    |||||||||||||| |||||||||||| | |||||||||||||    
T  6220227 cacactctcacatgagagtggtacatagtgtgtatggaaaaaa 6220185  T

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Target: chr4 (Bit Score: 51; Significance: 6e-20; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 57 - 119
Target Start/End: Complemental strand, 22364534 - 22364472
Alignment:
Q  57 acactctcacatgggagtggtacataatatgtatggaaaaaagggtgttcttcaaacattatc 119  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||    
T  22364534 acactctcacatgggagtggtacataatatgtatggagaaaagggtgttcatgaaacattatc 22364472  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 116
Target Start/End: Original strand, 32290318 - 32290377
Alignment:
Q  57 acactctcacatgggagtggtacataatatgtatggaaaaaagggtgttcttcaaacatt 116  Q
    |||||||||||||||||||||||||| |||||||||| ||||| |||||| | |||||||    
T  32290318 acactctcacatgggagtggtacatagtatgtatggagaaaagagtgttcatgaaacatt 32290377  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 47 - 132
Target Start/End: Complemental strand, 42179222 - 42179136
Alignment:
Q  47 actcacattcacactctcacatgggagtggtacataatatgtatggaaaaaagggtgttcttcaaacattat-ctaataaaaacaat 132  Q
    |||||| |||| |||||||||| ||||||||||||| | |||||| |||||||| ||||| | ||||||||| |||| |||||||||    
T  42179222 actcactttcagactctcacataggagtggtacatagtgtgtatgaaaaaaaggatgttcatgaaacattatcctaaaaaaaacaat 42179136  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 50498318 - 50498381
Alignment:
Q  56 cacactctcacatgggagtggtacataatatgtatggaaaaaagggtgttcttcaaacattatc 119  Q
    |||||||||| |||||||||||| ||| |||||||||| |||| ||||||| | ||||||||||    
T  50498318 cacactctcatatgggagtggtatatagtatgtatggagaaaatggtgttcatgaaacattatc 50498381  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 14786800 - 14786737
Alignment:
Q  56 cacactctcacatgggagtggtacataatatgtatggaaaaaagggtgttcttcaaacattatc 119  Q
    |||| ||||||||| |||||||||||||| |||||| |||||| ||||| | | ||||||||||    
T  14786800 cacaatctcacatgagagtggtacataatgtgtatgaaaaaaatggtgtccatgaaacattatc 14786737  T

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Target: chr1 (Bit Score: 44; Significance: 9e-16; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 13276538 - 13276475
Alignment:
Q  56 cacactctcacatgggagtggtacataatatgtatggaaaaaagggtgttcttcaaacattatc 119  Q
    ||||||||||||||||||||||||||| | |||||||| |||||||||||| | ||||||||||    
T  13276538 cacactctcacatgggagtggtacatagtgtgtatggagaaaagggtgttcatgaaacattatc 13276475  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 46845730 - 46845667
Alignment:
Q  56 cacactctcacatgggagtggtacataatatgtatggaaaaaagggtgttcttcaaacattatc 119  Q
    ||||||||||||||||||||||||||||| |||||| | |||||||||||| | ||||||||||    
T  46845730 cacactctcacatgggagtggtacataatgtgtatgcagaaaagggtgttcatgaaacattatc 46845667  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 526973 - 526910
Alignment:
Q  56 cacactctcacatgggagtggtacataatatgtatggaaaaaagggtgttcttcaaacattatc 119  Q
    ||||||||||||||| ||||||||||| | |||||||| |||||||||||| | ||||||||||    
T  526973 cacactctcacatggaagtggtacatagtgtgtatggagaaaagggtgttcatgaaacattatc 526910  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 15066084 - 15066021
Alignment:
Q  56 cacactctcacatgggagtggtacataatatgtatggaaaaaagggtgttcttcaaacattatc 119  Q
    |||||||||||||| |||||||||||  |||||||||||||||| |||||| | ||||||||||    
T  15066084 cacactctcacatgagagtggtacattgtatgtatggaaaaaagagtgttcatgaaacattatc 15066021  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 40314200 - 40314263
Alignment:
Q  56 cacactctcacatgggagtggtacataatatgtatggaaaaaagggtgttcttcaaacattatc 119  Q
    |||||||||| |||||||||||| ||| ||||||||||||||| ||||||| | ||||||||||    
T  40314200 cacactctcatatgggagtggtatatagtatgtatggaaaaaatggtgttcatgaaacattatc 40314263  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 39858459 - 39858518
Alignment:
Q  60 ctctcacatgggagtggtacataatatgtatggaaaaaagggtgttcttcaaacattatc 119  Q
    |||||| |||||||||||||||| | |||||||| |||||||||||| | ||||||||||    
T  39858459 ctctcatatgggagtggtacatagtgtgtatggagaaaagggtgttcatgaaacattatc 39858518  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 119
Target Start/End: Complemental strand, 49430546 - 49430485
Alignment:
Q  58 cactctcacatgggagtggtacataatatgtatggaaaaaagggtgttcttcaaacattatc 119  Q
    |||| |||||||||||||||||||| | |||||||| ||||| |||||| | ||| ||||||    
T  49430546 cactttcacatgggagtggtacatagtgtgtatggagaaaagagtgttcatgaaatattatc 49430485  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 56 - 117
Target Start/End: Original strand, 35906102 - 35906163
Alignment:
Q  56 cacactctcacatgggagtggtacataatatgtatggaaaaaagggtgttcttcaaacatta 117  Q
    |||||||||||||| |||||||||||| |||||||||| |||||||||||| | ||||||||    
T  35906102 cacactctcacatgagagtggtacatagtatgtatggagaaaagggtgttcatgaaacatta 35906163  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 15285437 - 15285500
Alignment:
Q  56 cacactctcacatgggagtggtacataatatgtatggaaaaaagggtgttcttcaaacattatc 119  Q
    ||||||||||||||||||||||||||| | |||||| | |||||||||||| | ||||||||||    
T  15285437 cacactctcacatgggagtggtacatagtgtgtatgcagaaaagggtgttcatgaaacattatc 15285500  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 57 - 119
Target Start/End: Original strand, 8076374 - 8076436
Alignment:
Q  57 acactctcacatgggagtggtacataatatgtatggaaaaaagggtgttcttcaaacattatc 119  Q
    |||||||||||||| |||||||||   ||||||| || |||||||||||| | ||||||||||    
T  8076374 acactctcacatggaagtggtacaatgtatgtatagagaaaagggtgttcatgaaacattatc 8076436  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 23916080 - 23916143
Alignment:
Q  56 cacactctcacatgggagtggtacataatatgtatggaaaaaagggtgttcttcaaacattatc 119  Q
    ||||||||||||||||||||||||||| | |||||| | |||||||||||| | ||||||||||    
T  23916080 cacactctcacatgggagtggtacatagtgtgtatgcagaaaagggtgttcatgaaacattatc 23916143  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 3121718 - 3121781
Alignment:
Q  56 cacactctcacatgggagtggtacataatatgtatggaaaaaagggtgttcttcaaacattatc 119  Q
    ||||||||||||||||||||||||||| | |||||| | |||||||||||| | ||||||||||    
T  3121718 cacactctcacatgggagtggtacatagtgtgtatgcagaaaagggtgttcatgaaacattatc 3121781  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 119
Target Start/End: Complemental strand, 14945811 - 14945737
Alignment:
Q  47 actcacattcac--actctcacatgggagtggtacataatatgtatggaaaaaagggtgttcttcaaacattatc 119  Q
    ||||||||||||  |||||||||| ||||||||||||||| |||||| | |||||||||||| | ||||||||||    
T  14945811 actcacattcacgcactctcacataggagtggtacataatgtgtatgaagaaaagggtgttcatgaaacattatc 14945737  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 56 - 117
Target Start/End: Complemental strand, 24475775 - 24475714
Alignment:
Q  56 cacactctcacatgggagtggtacataatatgtatggaaaaaagggtgttcttcaaacatta 117  Q
    ||||||||||| ||| ||||||||||| | |||||||| |||||||||||| | ||||||||    
T  24475775 cacactctcacgtggaagtggtacatagtgtgtatggagaaaagggtgttcatgaaacatta 24475714  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 33300089 - 33300152
Alignment:
Q  56 cacactctcacatgggagtggtacataatatgtatggaaaaaagggtgttcttcaaacattatc 119  Q
    ||||||||||||||||||||||||||| | |||||| | || | ||||||| | ||||||||||    
T  33300089 cacactctcacatgggagtggtacatagtgtgtatgaagaatacggtgttcatgaaacattatc 33300152  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 56 - 106
Target Start/End: Original strand, 2599639 - 2599689
Alignment:
Q  56 cacactctcacatgggagtggtacataatatgtatggaaaaaagggtgttc 106  Q
    ||||||||||||||||||||||||||| | |||||| ||||||||||||||    
T  2599639 cacactctcacatgggagtggtacatagtgtgtatgaaaaaaagggtgttc 2599689  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 28898103 - 28898166
Alignment:
Q  56 cacactctcacatgggagtggtacataatatgtatggaaaaaagggtgttcttcaaacattatc 119  Q
    |||||||||| ||| |||||||||||| | |||||||| |||| ||||||| | ||||||||||    
T  28898103 cacactctcatatgagagtggtacatagtgtgtatggagaaaatggtgttcatgaaacattatc 28898166  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 57 - 119
Target Start/End: Original strand, 35200675 - 35200737
Alignment:
Q  57 acactctcacatgggagtggtacataatatgtatggaaaaaagggtgttcttcaaacattatc 119  Q
    |||||||||||||| |||||||||   | ||||| || |||||||||||| ||||||||||||    
T  35200675 acactctcacatggaagtggtacaatgtgtgtatagagaaaagggtgttcatcaaacattatc 35200737  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 23004873 - 23004936
Alignment:
Q  56 cacactctcacatgggagtggtacataatatgtatggaaaaaagggtgttcttcaaacattatc 119  Q
    ||||||||||||||| |||||| |||| | |||||||| |||||||||||| | ||||||||||    
T  23004873 cacactctcacatggaagtggtgcatagtgtgtatggagaaaagggtgttcatgaaacattatc 23004936  T

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Target: scaffold0005 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 52930 - 52993
Alignment:
Q  56 cacactctcacatgggagtggtacataatatgtatggaaaaaagggtgttcttcaaacattatc 119  Q
    |||| ||||||||| |||||||||||||| |||||| |||||| ||||| | | ||||||||||    
T  52930 cacaatctcacatgagagtggtacataatgtgtatgaaaaaaatggtgtccatgaaacattatc 52993  T

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