View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18995_high_34 (Length: 227)

Name: NF18995_high_34
Description: NF18995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18995_high_34
NF18995_high_34
[»] chr1 (19 HSPs)
chr1 (1-211)||(45534366-45534576)
chr1 (1-138)||(45526162-45526298)
chr1 (21-109)||(35476975-35477063)
chr1 (21-108)||(35203161-35203248)
chr1 (24-108)||(35295192-35295276)
chr1 (1-108)||(35272881-35272988)
chr1 (21-107)||(35192821-35192907)
chr1 (21-108)||(35213563-35213650)
chr1 (21-108)||(35216952-35217039)
chr1 (41-106)||(8640315-8640380)
chr1 (35-108)||(35206419-35206492)
chr1 (23-108)||(35228427-35228512)
chr1 (21-108)||(35145208-35145295)
chr1 (21-102)||(35222769-35222850)
chr1 (1-103)||(35265319-35265421)
chr1 (1-62)||(35148889-35148950)
chr1 (59-108)||(35253954-35254003)
chr1 (41-87)||(19267381-19267427)
chr1 (40-108)||(35249607-35249675)
[»] chr2 (1 HSPs)
chr2 (35-108)||(33137639-33137712)
[»] chr3 (4 HSPs)
chr3 (35-108)||(17663860-17663933)
chr3 (35-108)||(19246361-19246434)
chr3 (22-108)||(898920-899006)
chr3 (48-96)||(53921123-53921171)
[»] chr7 (2 HSPs)
chr7 (41-91)||(38635327-38635377)
chr7 (41-91)||(38633580-38633630)


Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 45534366 - 45534576
Alignment:
Q  1 tccagttccagtagcggttgtcatcaccccaagtaatggcgagagatctagcagcaagcatgtaacactttttcccactctttctatctaattgaaagct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  45534366 tccagttccagtagcggttgtcatcaccccaagtaatggcgagagatctagcagcaagcatgtaacactttttcccactatttctatctaattgaaagct 45534465  T
Q  101 ctgcattttcaataaacccaaaaggcttattattagcaggcgaattatgatcaataatcactgagcatctaattttgccctacctaacatgagagaacaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||    
T  45534466 ctgcattttcaataaacccaaaaggcttattattagcaggcgaattatgatcaataatcactgaacatctgatttagccctacctaacatgagagaacaa 45534565  T
Q  201 tcaattatgat 211  Q
    |||||||||||    
T  45534566 tcaattatgat 45534576  T

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Target: chr1; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 45526162 - 45526298
Alignment:
Q  1 tccagttccagtagcggttgtcatcaccccaagtaatggcgagagatctagcagcaagcatgtaacactttttcccactctttctatctaattgaaagct 100  Q
    ||||| |||| |||||||  |||||||||||| |||||  ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  45526162 tccagatccaatagcggtcatcatcaccccaaataatgtggagagatctagcagcaagcatgtaacacttttttccactctttctatccaattgaaagct 45526261  T
Q  101 ctgcattttcaataaacccaaaaggcttattattagca 138  Q
    ||||| |||||||| ||||| ||||||||| |||||||    
T  45526262 ctgca-tttcaatatacccagaaggcttatgattagca 45526298  T

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Target: chr1; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 21 - 109
Target Start/End: Original strand, 35476975 - 35477063
Alignment:
Q  21 tcatcaccccaagtaatggcgagagatctagcagcaagcatgtaacactttttcccactctttctatctaattgaaagctctgcatttt 109  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  35476975 tcatcaccccaagcaatggcgagagatctagcagcaagcatgtaacactttttcccactctttctatccaattgaaggctctgcatttt 35477063  T

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Target: chr1; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 21 - 108
Target Start/End: Original strand, 35203161 - 35203248
Alignment:
Q  21 tcatcaccccaagtaatggcgagagatctagcagcaagcatgtaacactttttcccactctttctatctaattgaaagctctgcattt 108  Q
    |||| |||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||    
T  35203161 tcattaccccaagcaatggagagagatctagcagcaagcatgtaacacttttttccactctttctatccaattgaatgctctgcattt 35203248  T

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Target: chr1; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 24 - 108
Target Start/End: Complemental strand, 35295276 - 35295192
Alignment:
Q  24 tcaccccaagtaatggcgagagatctagcagcaagcatgtaacactttttcccactctttctatctaattgaaagctctgcattt 108  Q
    ||||||||| |||| | ||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||    
T  35295276 tcaccccaattaatagtgagagatctagcagcaagcatataacactttttcccactctttctctccaattgaaagctctgcattt 35295192  T

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Target: chr1; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 35272881 - 35272988
Alignment:
Q  1 tccagttccagtagcggttgtcatcaccccaagtaatggcgagagatctagcagcaagcatgtaacactttttcccactctttctatctaattgaaagct 100  Q
    |||||||||| |||||  | ||||||||||||  ||| || ||||||||||||| |||||||||||||||||| ||||||||||| |||||||||| |||    
T  35272881 tccagttccaatagcgtctatcatcaccccaaacaattgcaagagatctagcagaaagcatgtaacacttttttccactctttctctctaattgaatgct 35272980  T
Q  101 ctgcattt 108  Q
    ||||||||    
T  35272981 ctgcattt 35272988  T

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Target: chr1; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 107
Target Start/End: Original strand, 35192821 - 35192907
Alignment:
Q  21 tcatcaccccaagtaatggcgagagatctagcagcaagcatgtaacactttttcccactctttctatctaattgaaagctctgcatt 107  Q
    ||||||||||||| ||||| ||||||||||||||||||||| ||||||||||| |||||||| ||||| ||||||||||||| ||||    
T  35192821 tcatcaccccaagcaatggagagagatctagcagcaagcatataacacttttttccactcttcctatccaattgaaagctctacatt 35192907  T

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Target: chr1; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 21 - 108
Target Start/End: Original strand, 35213563 - 35213650
Alignment:
Q  21 tcatcaccccaagtaatggcgagagatctagcagcaagcatgtaacactttttcccactctttctatctaattgaaagctctgcattt 108  Q
    ||||||||||||| |||| |||||||||||||||||||||| ||||| ||||| ||||| ||||| || |||||||||||||||||||    
T  35213563 tcatcaccccaagcaatgccgagagatctagcagcaagcatataacatttttttccactttttctctccaattgaaagctctgcattt 35213650  T

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Target: chr1; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 21 - 108
Target Start/End: Original strand, 35216952 - 35217039
Alignment:
Q  21 tcatcaccccaagtaatggcgagagatctagcagcaagcatgtaacactttttcccactctttctatctaattgaaagctctgcattt 108  Q
    |||||||| |||| ||||| |||||||||||||| |||||||||||||||||| |||||||||||||| ||||| || ||||||||||    
T  35216952 tcatcaccgcaagcaatggagagagatctagcagaaagcatgtaacacttttttccactctttctatccaattggaaactctgcattt 35217039  T

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Target: chr1; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 41 - 106
Target Start/End: Original strand, 8640315 - 8640380
Alignment:
Q  41 gagagatctagcagcaagcatgtaacactttttcccactctttctatctaattgaaagctctgcat 106  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| || ||||||| |||||||||    
T  8640315 gagagatctagcagcaagcatgtaacacttttttccactctttctgtccaattgaacgctctgcat 8640380  T

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Target: chr1; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 35 - 108
Target Start/End: Original strand, 35206419 - 35206492
Alignment:
Q  35 aatggcgagagatctagcagcaagcatgtaacactttttcccactctttctatctaattgaaagctctgcattt 108  Q
    |||| ||||||||||||||| |||||||||||||||||| |||||||||||||| ||||| || ||||||||||    
T  35206419 aatgccgagagatctagcagaaagcatgtaacacttttttccactctttctatccaattggaaactctgcattt 35206492  T

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Target: chr1; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 23 - 108
Target Start/End: Original strand, 35228427 - 35228512
Alignment:
Q  23 atcaccccaagtaatggcgagagatctagcagcaagcatgtaacactttttcccactctttctatctaattgaaagctctgcattt 108  Q
    |||||||||||||||||| ||||||||||||| |||||| |||||||| || ||||||||||| || |||||||| |||| |||||    
T  35228427 atcaccccaagtaatggcaagagatctagcagaaagcatataacacttctttccactctttctctccaattgaaaactctacattt 35228512  T

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Target: chr1; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 108
Target Start/End: Original strand, 35145208 - 35145295
Alignment:
Q  21 tcatcaccccaagtaatggcgagagatctagcagcaagcatgtaacactttttcccactctttctatctaattgaaagctctgcattt 108  Q
    ||||||| ||||| |||||||||||||||||||| || ||||||||||||||| | ||||| |||||  ||||||||||| |||||||    
T  35145208 tcatcactccaagcaatggcgagagatctagcagaaaccatgtaacacttttttctactctctctattcaattgaaagctttgcattt 35145295  T

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Target: chr1; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 35222769 - 35222850
Alignment:
Q  21 tcatcaccccaagtaatggcgagagatctagcagcaagcatgtaacactttttcccactctttctatctaattgaaagctct 102  Q
    |||||| |||||  |||| |||||||||||||||||||||||  ||||||||| |||||||||||||| ||||||| |||||    
T  35222769 tcatcatcccaatcaatgtcgagagatctagcagcaagcatgacacacttttttccactctttctatccaattgaacgctct 35222850  T

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Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 35265319 - 35265421
Alignment:
Q  1 tccagttccagtagcggttgtcatcaccccaagtaatggcgagagatctagcagcaagcatgtaacactttttcccactctttctatctaattgaaagct 100  Q
    |||||||||||||| | ||   ||||||||||  ||| || ||||||||||||| |||||||||||||||||| ||||||||||| || ||||| || ||    
T  35265319 tccagttccagtagtgcttagtatcaccccaaacaattgcaagagatctagcagaaagcatgtaacacttttttccactctttctgtccaattggaaact 35265418  T
Q  101 ctg 103  Q
    |||    
T  35265419 ctg 35265421  T

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Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 35148889 - 35148950
Alignment:
Q  1 tccagttccagtagcggttgtcatcaccccaagtaatggcgagagatctagcagcaagcatg 62  Q
    |||||||||| ||||| || ||||||||||||| ||||  |||||||||||||| |||||||    
T  35148889 tccagttccaatagcgcttatcatcaccccaagcaatgctgagagatctagcagaaagcatg 35148950  T

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Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 35253954 - 35254003
Alignment:
Q  59 catgtaacactttttcccactctttctatctaattgaaagctctgcattt 108  Q
    ||||||||| ||||| |||||||||||||| |||||||| ||||||||||    
T  35253954 catgtaacaattttttccactctttctatccaattgaaaactctgcattt 35254003  T

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Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 19267427 - 19267381
Alignment:
Q  41 gagagatctagcagcaagcatgtaacactttttcccactctttctat 87  Q
    |||||||||||||||||| |||||||||||||| ||| | |||||||    
T  19267427 gagagatctagcagcaagaatgtaacacttttttccattatttctat 19267381  T

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Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 35249607 - 35249675
Alignment:
Q  40 cgagagatctagcagcaagcatgtaacactttttcccactctttctatctaattgaaagctctgcattt 108  Q
    ||||| ||||||||| || | ||||||| | ||| ||||||||| |||| ||||||||||||| |||||    
T  35249607 cgagaaatctagcagaaaacgtgtaacagtcttttccactctttttatccaattgaaagctctacattt 35249675  T

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Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 35 - 108
Target Start/End: Complemental strand, 33137712 - 33137639
Alignment:
Q  35 aatggcgagagatctagcagcaagcatgtaacactttttcccactctttctatctaattgaaagctctgcattt 108  Q
    ||||| ||||||||||||||||||||||||||||||||  ||||||||||| |  |||||||||||||||||||    
T  33137712 aatggtgagagatctagcagcaagcatgtaacacttttgtccactctttctgtgcaattgaaagctctgcattt 33137639  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 35 - 108
Target Start/End: Complemental strand, 17663933 - 17663860
Alignment:
Q  35 aatggcgagagatctagcagcaagcatgtaacactttttcccactctttctatctaattgaaagctctgcattt 108  Q
    ||||| |||||||||||||||||||| ||||||||| |  ||||||||||| |  |||||||||||||||||||    
T  17663933 aatggtgagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcattt 17663860  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 35 - 108
Target Start/End: Complemental strand, 19246434 - 19246361
Alignment:
Q  35 aatggcgagagatctagcagcaagcatgtaacactttttcccactctttctatctaattgaaagctctgcattt 108  Q
    ||||| |||||||||||||||||||| ||||||||| |  ||||||||||| |  |||||||||||||||||||    
T  19246434 aatggtgagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcattt 19246361  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 108
Target Start/End: Complemental strand, 899006 - 898920
Alignment:
Q  22 catcaccccaagtaatggcgagagatctagcagcaagcatgtaacactttttcccactctttctatctaattgaaagctctgcattt 108  Q
    ||||||| |||  ||||| ||||||||| |||||||||||||||||  |||| ||||| || ||||| |||| ||||||||| ||||    
T  899006 catcaccgcaatgaatggtgagagatctggcagcaagcatgtaacatatttttccacttttcctatccaatttaaagctctgaattt 898920  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 53921171 - 53921123
Alignment:
Q  48 ctagcagcaagcatgtaacactttttcccactctttctatctaattgaa 96  Q
    ||||||| ||||||| |||| |||||||||||||||||||| |||||||    
T  53921171 ctagcagaaagcatgcaacattttttcccactctttctatccaattgaa 53921123  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 91
Target Start/End: Original strand, 38635327 - 38635377
Alignment:
Q  41 gagagatctagcagcaagcatgtaacactttttcccactctttctatctaa 91  Q
    ||||||| |||||||||| |||||||||||||| |||||||||||||||||    
T  38635327 gagagatttagcagcaagaatgtaacacttttttccactctttctatctaa 38635377  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 91
Target Start/End: Original strand, 38633580 - 38633630
Alignment:
Q  41 gagagatctagcagcaagcatgtaacactttttcccactctttctatctaa 91  Q
    ||||||| |||||||||| ||| |||||||||| |||||||||||||||||    
T  38633580 gagagatttagcagcaaggatgcaacacttttttccactctttctatctaa 38633630  T

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