View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18995_high_7 (Length: 447)
Name: NF18995_high_7
Description: NF18995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18995_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 14 - 429
Target Start/End: Original strand, 9378580 - 9379013
Alignment:
| Q |
14 |
agatgagaaaaaggaaaaataggtaatattcacaatgcacaggtggaagaaaattgtgtagcaggaccaataagttttggatataaagctagcaattgat |
113 |
Q |
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| T |
9378580 |
agatgggaaaaaggaaaaataggtaatattcacaatgcacaggtggaagaaaattgtgtagcaggaccaataagttttggatataaagctagcaattgat |
9378679 |
T |
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| Q |
114 |
gagtttaatcttcccctcatgataagaactcaaataacttaaagccaatatatatagatacatgcatatcatcacaaggcaaagacac------------ |
201 |
Q |
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| T |
9378680 |
gagtttaatcttcccctcatgataagaactcaaataacttaaagccaatatatatagatacatgcatatcatcacaaggcaaagacacaaacacaaacac |
9378779 |
T |
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| Q |
202 |
------aaacacaaacacactctctacctcaaaaaacattcctctccttcacatgatgtttgaattagaaaacatggaatatagccaatatagtagttat |
295 |
Q |
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| T |
9378780 |
aaacacaaacacaaacacactctctacctcaaaaaacattcctctccttcacatgatgtttgaattagaaaacatggaatatagccaatatagtagttat |
9378879 |
T |
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| Q |
296 |
tcagcagaagcaggagaagaagaaacatacacaactagttgcatatcttccatgagaaagaagaaaaacaagaatacaaagaggtttagtgatgaacaaa |
395 |
Q |
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| T |
9378880 |
tcagcagaagcaggagaagaagaaacatacacaactagtagcatatcttccatgagaaagaagaaaaacaagaatacaaagaggtttactgatgaacaaa |
9378979 |
T |
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| Q |
396 |
tcaaatcattggaaactatgtttgaggctgagac |
429 |
Q |
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| T |
9378980 |
tcaaatcattggaaactatgtttgaaactgagac |
9379013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 145
Target Start/End: Original strand, 8185709 - 8185779
Alignment:
| Q |
76 |
aggaccaataagttttggatataaagctagcaattga-tgagtttaatcttcccctcatgataagaactca |
145 |
Q |
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| T |
8185709 |
aggaccaatgagttttggatataaagctagcaattgagggggttaaatctgatcctcatgataagaactca |
8185779 |
T |
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