View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18995_high_8 (Length: 446)
Name: NF18995_high_8
Description: NF18995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18995_high_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 11 - 428
Target Start/End: Complemental strand, 5088149 - 5087739
Alignment:
| Q |
11 |
cagagacgatcccgaagtggtttgaacatcaaagcaaacaaccgacaatttctttctggtatcggaacaacttcccttccatagctctattcttttctac |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5088149 |
cagagacgatcccgaagtggtttgaacatcaaagcaaacaaccgacaatttctttctggtatcggaacaacttcccttccatagctctattcttttctac |
5088050 |
T |
|
| Q |
111 |
taaatggatgcataacaaagactccaatagtatagatactaatttcagaggcaatctttttataaatggccatacatgtacttttgtggggaatgggaat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5088049 |
taaatggatgcataacaaagactccaatagtatagatactaaattcagaggcaatctttttataaatggccatacatgtacttttgtggggaatgggaat |
5087950 |
T |
|
| Q |
211 |
ccttttgatccttctatnnnnnnnnnnnnnnnngagaatcactttaatccagggatagtaccagatcatacatatctatatgacctgaatttggcaatga |
310 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5087949 |
ccttttgatccttctat-------aaaaaaaaagagaatcactttaatccagggatagtaccagatcatacatatctatatgacctgaatttggcaatga |
5087857 |
T |
|
| Q |
311 |
gggttagcaaaagctgcaggaggaaacttaaatcgaaactggtcaaagatattttaaaaacagaatggatccatgctgagattaggtttgagtttaagag |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5087856 |
gggttagcaaaagctgcaggaggaaacttaaatcgaaactggtcaaagatattttaaaaacagaatggatccatgctgagattaggtttgagtttaagag |
5087757 |
T |
|
| Q |
411 |
taatgagaatgaggtgat |
428 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
5087756 |
taatgagaatgaggtgat |
5087739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 13 - 107
Target Start/End: Original strand, 5097297 - 5097391
Alignment:
| Q |
13 |
gagacgatcccgaagtggtttgaacatcaaagcaaacaaccgacaatttctttctggtatcggaacaacttcccttccatagctctattcttttc |
107 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5097297 |
gagatgatcccaaagtggtttgaacatcaaagcaaacaaccgacaatttctttctggtatcggaacgacttcccttccatagctctattcttttc |
5097391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 280 - 338
Target Start/End: Original strand, 26829280 - 26829338
Alignment:
| Q |
280 |
acatatctatatgacctgaatttggcaatgagggttagcaaaagctgcaggaggaaact |
338 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||| |
|
|
| T |
26829280 |
acatatctatatgacctgaatttggcaatgacggttagaaaaagctgtaggaggaaact |
26829338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 111 - 179
Target Start/End: Original strand, 26642012 - 26642080
Alignment:
| Q |
111 |
taaatggatgcataacaaagactccaatagtatagatactaatttcagaggcaatctttttataaatgg |
179 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| ||| ||| ||||||||||||||||||||| |
|
|
| T |
26642012 |
taaatggatgcataacaaggactccaatagtatagattttaaattcgtaggcaatctttttataaatgg |
26642080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 111 - 179
Target Start/End: Original strand, 26747978 - 26748046
Alignment:
| Q |
111 |
taaatggatgcataacaaagactccaatagtatagatactaatttcagaggcaatctttttataaatgg |
179 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| ||| ||| ||||||||||||||||||||| |
|
|
| T |
26747978 |
taaatggatgcataacaaggactccaatagtatagattttaaattcgtaggcaatctttttataaatgg |
26748046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 111 - 189
Target Start/End: Original strand, 26829181 - 26829259
Alignment:
| Q |
111 |
taaatggatgcataacaaagactccaatagtatagatactaatttcagaggcaatctttttataaatggccatacatgt |
189 |
Q |
| |
|
||||||||| |||||||| ||||| ||||||||||| ||| |||||| ||||| ||||||||||||||||| ||||| |
|
|
| T |
26829181 |
taaatggattcataacaaggactcaaatagtatagactttaaattcagatgcaatatttttataaatggccatgcatgt |
26829259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University