View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18995_low_10 (Length: 389)

Name: NF18995_low_10
Description: NF18995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18995_low_10
NF18995_low_10
[»] chr3 (9 HSPs)
chr3 (12-332)||(6014069-6014390)
chr3 (28-332)||(6018268-6018572)
chr3 (10-332)||(6020410-6020732)
chr3 (12-94)||(6003743-6003825)
chr3 (332-372)||(6012615-6012655)
chr3 (332-373)||(6016941-6016982)
chr3 (10-43)||(5750191-5750224)
chr3 (10-43)||(5787150-5787183)
chr3 (10-50)||(5704037-5704077)
[»] chr7 (1 HSPs)
chr7 (255-324)||(23394987-23395057)
[»] chr8 (1 HSPs)
chr8 (269-332)||(27933294-27933358)
[»] scaffold0003 (1 HSPs)
scaffold0003 (267-332)||(356710-356776)
[»] chr1 (1 HSPs)
chr1 (268-332)||(12788820-12788885)


Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 12 - 332
Target Start/End: Complemental strand, 6014390 - 6014069
Alignment:
Q  12 tatacttgcgtttgtaatttttcgtcttgtaatgaattgaaattaannnnnnnaagagactaaagtggattacattacccacaagaaaaagtcatacgac 111  Q
    |||||||||||||||||||||||||||||||||||||||||| |||       || |||||||| ||||||| ||||||||||| |||||||||| || |    
T  6014390 tatacttgcgtttgtaatttttcgtcttgtaatgaattgaaaataatttttttaaaagactaaattggattatattacccacaataaaaagtcattcggc 6014291  T
Q  112 acaagacggatttaattttttgaaagaaatagaaacaacccaaaagattcatttccggactcacaaaggacggattaactgttaggatctttaagctttg 211  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||||||||| | ||||||||||||||| ||||||| |||||||||||||||||    
T  6014290 acaagacggatttaattttttgaaagaaatagaaacaagccaatagattcatttccagtctcacaaaggacggaataactgtcaggatctttaagctttg 6014191  T
Q  212 gaggcaatttgttttcaattatagcgctacatttttcttcaactttctgttcttcatttaatattagatattaaatttaaaaacaatgagaatagatt-g 310  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  6014190 gaggcaatttgttttcaattatagcgctatatttttcttcaactttaggttcttcatttaatattagatattaaatttaaaaacaatgagaatagattag 6014091  T
Q  311 caaacaatttcatagaaaatag 332  Q
    ||||||||||||||||||||||    
T  6014090 caaacaatttcatagaaaatag 6014069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 28 - 332
Target Start/End: Complemental strand, 6018572 - 6018268
Alignment:
Q  28 atttttcgtcttgtaatgaattgaaattaannnnnnnaagagactaaagtggattacattacccacaagaaaaagtcatacgacacaagacggatttaat 127  Q
    |||||| ||||||||||||| |||||||||       |||| |||||| ||||||| |||||| ||||||||||||||| || ||||||| | |||||||    
T  6018572 atttttggtcttgtaatgaaatgaaattaatttttttaagaaactaaaatggattatattacc-acaagaaaaagtcattcggcacaagatgaatttaat 6018474  T
Q  128 tttttgaaagaaatagaaacaacccaaaagattcatttccggactcacaaaggacggattaactgttaggatctttaagctttggaggcaatttgttttc 227  Q
    |||||||||||||||||||||| |||| |||||||||||| | |||||||||||| || ||||||| |||| ||||||||||||||||||||||||||||    
T  6018473 tttttgaaagaaatagaaacaaaccaatagattcatttccagtctcacaaaggacagaataactgtcaggaactttaagctttggaggcaatttgttttc 6018374  T
Q  228 aattatagcgctacatttttcttcaactttctgttcttcatttaatattagatattaaatttaaaaacaatgagaatagatt-gcaaacaatttcataga 326  Q
    |||||||  |||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  6018373 aattatatagctacattttgcttcaactttaggttcttcatttaatattagatattaaatttaaaaacaatgagaatagattagcaaacaatttcataga 6018274  T
Q  327 aaatag 332  Q
    ||||||    
T  6018273 aaatag 6018268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 10 - 332
Target Start/End: Complemental strand, 6020732 - 6020410
Alignment:
Q  10 attatacttgcgtttgtaatttttcgtcttgtaatgaattgaaattaannnnnnnaagagactaaagtggattacattacccacaagaaaaagtcatacg 109  Q
    ||||||| ||| ||||||||||||||||||||||||||||| |||||        |||||| |||||||||||| |||||||||||||||||||||| ||    
T  6020732 attatacctgcatttgtaatttttcgtcttgtaatgaattgtaatta--ttttttaagagattaaagtggattatattacccacaagaaaaagtcatccg 6020635  T
Q  110 acacaagacggatttaatttttt-gaaagaaatagaaacaacccaaaagattcatttccggactcacaaaggacggattaactgttaggatctttaagct 208  Q
     ||||||| | ||||| |||||| |||||||||||||||||  ||| || |||||||||   ||||||| |||||||  |||||| |  |||||||||||    
T  6020634 gcacaagatgtatttactttttttgaaagaaatagaaacaaatcaatagtttcatttccaatctcacaatggacggaaaaactgtcaaaatctttaagct 6020535  T
Q  209 ttggaggcaatttgttttcaattatagcgctacatttttcttcaactttctgttcttcatttaatattagatattaaatttaaaaacaatgagaatagat 308  Q
    ||||||||||||| |||| |||||||||  |||||||| ||||| ||||  |||||||| |||||||||||||||||||||||| ||  |||||||| ||    
T  6020534 ttggaggcaatttattttgaattatagctatacattttgcttcacctttaggttcttcacttaatattagatattaaatttaaatacgttgagaataaat 6020435  T
Q  309 t-gcaaacaatttcatagaaaatag 332  Q
    | |||||||||||||||||||||||    
T  6020434 tagcaaacaatttcatagaaaatag 6020410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 6003825 - 6003743
Alignment:
Q  12 tatacttgcgtttgtaatttttcgtcttgtaatgaattgaaattaannnnnnnaagagactaaagtggattacattacccaca 94  Q
    |||||||| |||||||||||||||||||||||||||||||||||||       ||||||||||||||||||| ||||||||||    
T  6003825 tatacttgtgtttgtaatttttcgtcttgtaatgaattgaaattaatttttttaagagactaaagtggattatattacccaca 6003743  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 332 - 372
Target Start/End: Complemental strand, 6012655 - 6012615
Alignment:
Q  332 gtcgtctatactactttttcccatctcctattcggttaatg 372  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  6012655 gtcgtctatactactttttcccatctcctattcggttaatg 6012615  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 332 - 373
Target Start/End: Complemental strand, 6016982 - 6016941
Alignment:
Q  332 gtcgtctatactactttttcccatctcctattcggttaatga 373  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  6016982 gtcgtctatactactttctcccatctcctattcggttaatga 6016941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 5750191 - 5750224
Alignment:
Q  10 attatacttgcgtttgtaatttttcgtcttgtaa 43  Q
    ||||||||||||||||||||||||||||| ||||    
T  5750191 attatacttgcgtttgtaatttttcgtctggtaa 5750224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 5787150 - 5787183
Alignment:
Q  10 attatacttgcgtttgtaatttttcgtcttgtaa 43  Q
    ||||||||||||||||||||||||||||| ||||    
T  5787150 attatacttgcgtttgtaatttttcgtctggtaa 5787183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 5704037 - 5704077
Alignment:
Q  10 attatacttgcgtttgtaatttttcgtcttgtaatgaattg 50  Q
    ||||||||||||| ||||||||||| ||||||||| |||||    
T  5704037 attatacttgcgtatgtaatttttcttcttgtaattaattg 5704077  T

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Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 255 - 324
Target Start/End: Complemental strand, 23395057 - 23394987
Alignment:
Q  255 tttctgttcttcatttaatattagatattaaatttaaaaacaatgagaatagatt-gcaaacaatttcata 324  Q
    |||| ||||||||||||||||||||||| |||||||||||| ||||||||||||| | |||||||||||||    
T  23395057 tttcggttcttcatttaatattagatatcaaatttaaaaacgatgagaatagattagaaaacaatttcata 23394987  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 269 - 332
Target Start/End: Complemental strand, 27933358 - 27933294
Alignment:
Q  269 ttaatattagatattaaatttaaaaacaatgagaatagatt-gcaaacaatttcatagaaaatag 332  Q
    ||||||||| |||| ||||||||| |||||||||||||||| | ||||||||||||| |||||||    
T  27933358 ttaatattatatatcaaatttaaagacaatgagaatagattagaaaacaatttcatataaaatag 27933294  T

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Target: scaffold0003 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 332
Target Start/End: Original strand, 356710 - 356776
Alignment:
Q  267 atttaatattagatattaaatttaaaaacaatgagaatagatt-gcaaacaatttcatagaaaatag 332  Q
    |||||||||||||||| ||||||||| || ||||||||||||| | || |||||||||| |||||||    
T  356710 atttaatattagatatcaaatttaaagacgatgagaatagattagaaagcaatttcatataaaatag 356776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 332
Target Start/End: Complemental strand, 12788885 - 12788820
Alignment:
Q  268 tttaatattagatattaaatttaaaaacaatgagaatagat-tgcaaacaatttcatagaaaatag 332  Q
    ||||||||||||||| ||||||||| ||||||||| |||||  | ||||||||||||| |||||||    
T  12788885 tttaatattagatatcaaatttaaagacaatgagagtagataagaaaacaatttcatataaaatag 12788820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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