View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18995_low_13 (Length: 383)
Name: NF18995_low_13
Description: NF18995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18995_low_13 |
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| [»] scaffold0168 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 8 - 367
Target Start/End: Original strand, 34112113 - 34112472
Alignment:
| Q |
8 |
agattatacttgttagtgaaggtaaagcaagtaaagtctaataaaaacagatataacttgaatattattagaacaatctgaccttagctgaaacacaaat |
107 |
Q |
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| T |
34112113 |
agatcatacttgttagtgaaggtaaagtaagtaaagtctaataaaaacagatacaacttgaatattattagaacaatctgaccttagctgaaacacaaat |
34112212 |
T |
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| Q |
108 |
taattgtgtgaacatgacaaattttatttatataatatcccccgtatatcaacttcacatctagcacatatatcatatttcattacaatgatcaatgttg |
207 |
Q |
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| T |
34112213 |
taattgtgtgaacatgacaagttttatttatataatatcccccgtatatcaacttcacatctagcacatatatcatatttcattacaatgatcaatgttg |
34112312 |
T |
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| Q |
208 |
aacaaatgaatgagaattgattaaaggttatacattatataaggtgtagtagtagtattgtatggtttgataattaatctcacttggccatcataacctt |
307 |
Q |
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| T |
34112313 |
aacaaatgaatgagaattgattaaaggttatacattatataaggtgtagtagtagtattgtatggtttgataattaatctcacttggccatcataacctt |
34112412 |
T |
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| Q |
308 |
aacaaactcatcataattaatttgaccatcaccatcaacatcagcctctcgaatcatttc |
367 |
Q |
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| T |
34112413 |
aacaaactcatcataattaatttgaccatcaccatcaacatcagcctctcgaatcatttc |
34112472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 286 - 364
Target Start/End: Original strand, 38317185 - 38317263
Alignment:
| Q |
286 |
ctcacttggccatcataaccttaacaaactcatcataattaatttgaccatcaccatcaacatcagcctctcgaatcat |
364 |
Q |
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| T |
38317185 |
ctcacttagccatcatgactttgacaaactcctcatagttgatctgaccatcaccatcaacatcagcctcgcgaatcat |
38317263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0168 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0168
Description:
Target: scaffold0168; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 364
Target Start/End: Original strand, 35625 - 35703
Alignment:
| Q |
286 |
ctcacttggccatcataaccttaacaaactcatcataattaatttgaccatcaccatcaacatcagcctctcgaatcat |
364 |
Q |
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| T |
35625 |
ctcacttggccatcataactttgacaaactcctcgtagttgatctgcccatcaccatcaacatcggcttcacgaatcat |
35703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 294 - 364
Target Start/End: Original strand, 8921108 - 8921178
Alignment:
| Q |
294 |
gccatcataaccttaacaaactcatcataattaatttgaccatcaccatcaacatcagcctctcgaatcat |
364 |
Q |
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| T |
8921108 |
gccatcatgaccttaacgaattcctcgtagtttatttgaccatcaccatcaacatcagcctcacggatcat |
8921178 |
T |
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