View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18995_low_14 (Length: 379)
Name: NF18995_low_14
Description: NF18995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18995_low_14 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 19 - 379
Target Start/End: Complemental strand, 54848549 - 54848170
Alignment:
| Q |
19 |
aggaagaaagcagagtaatgaatgattctaaacacgtgtttggaatgacactgagattgtcagaattatggtgaacataataattttgacaaaaactacg |
118 |
Q |
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| T |
54848549 |
aggaagaaagcagagtaatgaatgattctaaacacgtgtttggaatgacactgagattgtcagaattatggtgaacataataattttgacaaaaactacg |
54848450 |
T |
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| Q |
119 |
ttttagagcttgaataa-------------------atttgtcaatcaaggtcaatccaaacatgtactgattcttgtgaacatccaaataattttaagc |
199 |
Q |
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| T |
54848449 |
ttttagagcttgaataagataacagtgtcacgctaaatttgtcaatcaaggtcaatccaaacatgtactgattcttgtgaacatccaaataattttaagc |
54848350 |
T |
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| Q |
200 |
attgacgtatgaggtagttaattgagtgcaacttggcgcccttcgacaatgatatggattaaggttgatgaattcctttctatgagaatgtttctttctt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
54848349 |
attgacgtatgaggtagttaattgagtgcaacttggcgcccttcgacaatgatatggattaaggttgatgaattccttcctatgagaatgtttctttctt |
54848250 |
T |
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| Q |
300 |
ttctttgcatcaggatgttttggtttcttcaaatcctcaaccgaatgtacatcttccatacaaacaaatgatcttgcttt |
379 |
Q |
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| T |
54848249 |
ttctttgcatcaggatgttttggtttcttcaaatcctcaaccgaatgtacatcttccatacaaacaaatgatcttgcttt |
54848170 |
T |
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