View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18995_low_15 (Length: 375)
Name: NF18995_low_15
Description: NF18995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18995_low_15 |
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| [»] scaffold0009 (2 HSPs) |
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| [»] scaffold0031 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 8 - 358
Target Start/End: Original strand, 47651237 - 47651587
Alignment:
| Q |
8 |
caccacagaacattaaacggacaaatttgttacattaatacttaattcttccccttttagtaaccttcacagtcaaacaaaaataaccctagattttaat |
107 |
Q |
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| T |
47651237 |
caccacaaaacattaaacggacaaatttgttacattaatacttaattcttccccttttagtaaccttcacagtcaaacaaaaataaccctagattttaat |
47651336 |
T |
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| Q |
108 |
tgagggagaaagccagcggaaacaaatcattgacaaaccccataaacaagccacttatacaatcaaacattttaccaaaattgatcaaaggaaaaacgta |
207 |
Q |
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| T |
47651337 |
tgagggagaaagccagcggaaacaaattattgacaaaccccataaacaagccatttatgcaatcaaacattttaccaaaattgatcaaaggaaaaacgta |
47651436 |
T |
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| Q |
208 |
gtaaatgaacaattcatgaaatcaaactttcggaggcagcaaaatacttgcaagcctaattgaaagagatatgaatctgcaaaatactttagctttgctc |
307 |
Q |
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| T |
47651437 |
gtaaatgaacaattcatgaaatcaaactttcggaggcagcaaaatacttgcaagcctaattgaaagagatatgaatctgcaaaatactttagctttgctc |
47651536 |
T |
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| Q |
308 |
ggtctctcttgttaattccattgtgcagagtttcttgcttttactcaaaaa |
358 |
Q |
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| T |
47651537 |
ggtctttcttgttaattccattgtgcagagtttcttgcttttactcaaaaa |
47651587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 106; Significance: 6e-53; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 51 - 208
Target Start/End: Complemental strand, 169496 - 169339
Alignment:
| Q |
51 |
aattcttccccttttagtaaccttcacagtcaaacaaaaataaccctagattttaattgagggagaaagccagcggaaacaaatcattgacaaaccccat |
150 |
Q |
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| T |
169496 |
aattattccccttttagcaacagtcacggtcaaacaaaaataaccctagattttgattgagagagaaagccagaggaaacaaataattgacaaaccccat |
169397 |
T |
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| Q |
151 |
aaacaagccacttatacaatcaaacattttaccaaaattgatcaaaggaaaaacgtag |
208 |
Q |
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| T |
169396 |
aaacaagccattcatgcaatcaaacattttaccaaaattgatcaaaggaaaaatgtag |
169339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 348
Target Start/End: Complemental strand, 169208 - 169137
Alignment:
| Q |
279 |
tgaatctgcaaaatactttagctttgctcggtctctcttgttaattccat--tgtgcagagtttcttgcttt |
348 |
Q |
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| T |
169208 |
tgaatctgtaaaatacttgagcgttgcttggtctctctcattacctccatattgtgcagagtttcttgcttt |
169137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 89; Significance: 8e-43; HSPs: 2)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 86 - 230
Target Start/End: Original strand, 93122 - 93266
Alignment:
| Q |
86 |
aaaaataaccctagattttaattgagggagaaagccagcggaaacaaatcattgacaaaccccataaacaagccacttatacaatcaaacattttaccaa |
185 |
Q |
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| T |
93122 |
aaaaataaccctagattttgattgagagagaaagccagcggaaaaaaatcgttgacaaaccccaaaaacaaaccattcatgcaatcaaacattttaccaa |
93221 |
T |
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| Q |
186 |
aattgatcaaaggaaaaacgtagtaaatgaacaattcatgaaatc |
230 |
Q |
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| T |
93222 |
aattgataaaaaaaaaaacgtagtatataaacaattcatgaaatc |
93266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 93015 - 93100
Alignment:
| Q |
16 |
aacattaaacggacaaatttgttacattaatacttaattcttccccttttagtaaccttcacagtcaaacaaaaataaccctagat |
101 |
Q |
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| T |
93015 |
aacattaaacagacaaatttgttacattaattcccaattctttcccttttagcaacattcacagtcaaacaaaagtaaccctagat |
93100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 167 - 208
Target Start/End: Original strand, 16179682 - 16179723
Alignment:
| Q |
167 |
caatcaaacattttaccaaaattgatcaaaggaaaaacgtag |
208 |
Q |
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| T |
16179682 |
caatcaaacattttaccaaaattgatcaaaggaaaaacgtag |
16179723 |
T |
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