View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18995_low_18 (Length: 312)
Name: NF18995_low_18
Description: NF18995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18995_low_18 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 13 - 299
Target Start/End: Complemental strand, 28613003 - 28612717
Alignment:
| Q |
13 |
taggccacaggctttgaannnnnnnccttttaattaatgttcatttcccttttttcctacaaaatcatatattgaacaaacccaagagaatgtcaaagtg |
112 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
28613003 |
taggccacaggctttgaatttttttccttttaattaatgttcatttcccttttttcctacaaaatcatatattggacaaacccaagagaatgtcaaagtg |
28612904 |
T |
|
| Q |
113 |
ttgtaaaggaacaagtaacattgtatgttacaagcaaatgtgacagaggacattaacattgatatcaaaagtacgatttggttttgaattttaatgtaaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28612903 |
ttgtaaaggaacaagtaacattgtatgttacaagcaaatgtgacagaggacattaacattgatatcaaaagtacgatttggttttgaattttaatgtaaa |
28612804 |
T |
|
| Q |
213 |
gaaatgtcaacactatcaatgtttatcaattggtgcactggcaccatgaatgagctagctagctagtagttctgaaatgtattattt |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28612803 |
gaaatgtcaacactatcaatgtttatcaattggtgcactggcaccatgaatgagctagctagctagtagttctgaaatgtattattt |
28612717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University