View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18995_low_2 (Length: 599)
Name: NF18995_low_2
Description: NF18995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18995_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 550; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 1 - 582
Target Start/End: Original strand, 31193307 - 31193888
Alignment:
| Q |
1 |
cacccctcagcccaagaatggaaatctggagtgtgaccttagtggcctgatagcagtaatctaatgcaagcaggtggtccaattgatcttagataagctc |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31193307 |
cacccctcagcccaataatggaaatctggagtgtgaccttagtggcctgatagcagtaatctaatgcaagcaggtggtccaattgatcttagataagctc |
31193406 |
T |
|
| Q |
101 |
tgctaccatattagaatttgagttcggccaaactcaacccatacaaaattgacttgtatggtgagaatcgtctccacttataaacacattacaatcaagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31193407 |
tgctaccatattagaatttgagttcggccaaactcaacccatacaaaattgacttgtatggtgagaatcgtctccacttataaacacattacaatcaagt |
31193506 |
T |
|
| Q |
201 |
tgaaagaagcaagaatcatctacttattcaatatcataacattaacataatagcatacatttttgctccaaattaaatccactaggctgcatactgaaac |
300 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31193507 |
tgaaagaagcgagaatcatctacttattcaatatcataacattaagataatagcatacatttttgctccaaattaaatccactaggctgcatacggaaac |
31193606 |
T |
|
| Q |
301 |
tattatagaacaattaagagctaacttaccatttcctggattttaacctaggccgaacagaaatcaccgtccaacagtatcatgcgtgtgtacattttca |
400 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31193607 |
tattatagaacaattaagacctaacttaccatttcctggattttaacctaggctgaacagaaatcaccgtccaacagtatcatgcgtgtgtacattttca |
31193706 |
T |
|
| Q |
401 |
acaaattgaaatcatcgatcaaacacgcattgaacatcaaacctaagtaacgtaattgtgcaaaaattgaagttcgtaacagattcgaattcgatggaaa |
500 |
Q |
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| T |
31193707 |
acaaattgaaatcatcgatcaaacacgcattgaacatcaaacctaagtaacgtaatcgtgcaaaaattgaagttcgtaacagattcgaattcgatggaaa |
31193806 |
T |
|
| Q |
501 |
tgcgacgaaaaatgagagagaaagaaatgagattgatggaatgaggaagttttgcttgtctttgttttgcctgattggagga |
582 |
Q |
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| T |
31193807 |
tgcgacgtaaaatgagagagaaagaaatgagattgatggaatgaggaagttttgcttgtctttgttttgcctgattggagga |
31193888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 190 - 582
Target Start/End: Original strand, 31015342 - 31015727
Alignment:
| Q |
190 |
tacaatcaagttgaaagaagcaagaatcatctacttattcaatatcataacattaacataatagcatacatttttgctccaaattaaatccactaggctg |
289 |
Q |
| |
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|||| |||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
31015342 |
tacagtcaagtcgagagaagcgagaatcatctacttattcaatatcataacattaacataatagcacacatttttgctccaaattaaatccactaggctg |
31015441 |
T |
|
| Q |
290 |
catactgaaactattatagaacaattaagagctaacttaccatttcctggattttaacctaggccgaacagaaatcaccgtccaacagtatcatgcgtgt |
389 |
Q |
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| T |
31015442 |
catactgaaactattatagaacaattaagacctaacttaccatttcctggattttaacctaggctgaacagaaatcaccgtccaacagtatcatgcgtgt |
31015541 |
T |
|
| Q |
390 |
gtacattttcaacaaattgaaatcatcgatcaaacacgcattgaacatcaaacctaagtaacgtaattgtgcaaaaattgaagttcgtaacagattcgaa |
489 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||| || | ||||| ||||| ||||||||| |||| ||||||||||||||||| |
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| T |
31015542 |
gtacattttcaacaaattgaaatcatcgatcaaacacacattgaacatgaactcgaagtatagtaatcgtgcaaaaaatgaaattcgtaacagattcgaa |
31015641 |
T |
|
| Q |
490 |
ttcgatggaaatgcgacgaaaaatgagagagaaagaaatgagattgatggaatgaggaagttttgcttgtctttgttttgcctgattggagga |
582 |
Q |
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| T |
31015642 |
ttcgct--aaa---ga--aaaaatgagagaaaagaaaatgagaatgatggaatgagggagttttgcttgtctttgttttgcgcgattggagga |
31015727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 75 - 190
Target Start/End: Original strand, 31015184 - 31015299
Alignment:
| Q |
75 |
tggtccaattgatcttagataagctctgctaccatattagaatttgagttcggccaaactcaacccatacaaaattgacttgtatggtgagaatcgtctc |
174 |
Q |
| |
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||||||||| ||| || |||| |||||||||||| |||||||||||||||| |||||| |||||||||||||||| ||||||||||||||| | ||||| |
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| T |
31015184 |
tggtccaatggatattggataggctctgctaccacattagaatttgagttcagccaaaatcaacccatacaaaatcgacttgtatggtgagtactgtctc |
31015283 |
T |
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| Q |
175 |
cacttataaacacatt |
190 |
Q |
| |
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| T |
31015284 |
cacttataaacacatt |
31015299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 68 - 137
Target Start/End: Original strand, 49190137 - 49190206
Alignment:
| Q |
68 |
aagcaggtggtccaattgatcttagataagctctgctaccatattagaatttgagttcggccaaactcaa |
137 |
Q |
| |
|
||||||||||||||| |||||| |||| |||||| |||||| |||||||||| ||| ||||||||||| |
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| T |
49190137 |
aagcaggtggtccaacggatcttggataggctctgataccatcttagaatttgggttgagccaaactcaa |
49190206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 14314791 - 14314747
Alignment:
| Q |
10 |
gcccaagaatggaaatctggagtgtgaccttagtggcctgatagc |
54 |
Q |
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| T |
14314791 |
gcccaagactggacatctggagtgtgaccctagtggcctgatagc |
14314747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 10485157 - 10485103
Alignment:
| Q |
104 |
taccatattagaatttgagttcggccaaactcaacccatacaaaattgacttgta |
158 |
Q |
| |
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| T |
10485157 |
taccatattagaatttgggttaggcctaactcaaaccctacaaaactgacttgta |
10485103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 73 - 165
Target Start/End: Original strand, 50187366 - 50187457
Alignment:
| Q |
73 |
ggtggtccaattgatcttagataagctctgctaccatattagaatttgagttcggccaaactcaacccatacaaaattgacttgtatggtgag |
165 |
Q |
| |
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||||||||||| |||||| |||| ||| || |||| |||||||||||||| |||| ||||||| || ||| ||| ||||||||| |||||| |
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| T |
50187366 |
ggtggtccaatggatcttggatagactcaactgccatcttagaatttgagttgggcctaactcaa-ccttactaaactgacttgtaaggtgag |
50187457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 148
Target Start/End: Original strand, 2249679 - 2249716
Alignment:
| Q |
111 |
ttagaatttgagttcggccaaactcaacccatacaaaa |
148 |
Q |
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|||||||||||||| |||| |||||||||||||||||| |
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| T |
2249679 |
ttagaatttgagttgggcctaactcaacccatacaaaa |
2249716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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