View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18995_low_21 (Length: 275)
Name: NF18995_low_21
Description: NF18995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18995_low_21 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 2 - 275
Target Start/End: Original strand, 52475897 - 52476170
Alignment:
| Q |
2 |
ctcgtgggtagataatactcaagagtttcaattcaataatactgatactccttaccagcaataatcatcgttaagatattatctttgatctctttatctg |
101 |
Q |
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|||||| ||| || ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52475897 |
ctcgtgcgtaaatcatattcaagagtttcaattcaataatactaatactccttaccagcaataatcatcgttaagatattatctttgatctctttatctg |
52475996 |
T |
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| Q |
102 |
ttagcgttgttacttcatccttttctgaattattttcatcatctgctaaaagttgctgaagaaaatctacacgcctgtctgcaatttcgtgtcttctttt |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52475997 |
ttagcgttgttacttcatccttttctgaattattttcatcatctgctaaaagttgctgaagaaaatctacacgcctgtctgcaatttcgtgtcttctttt |
52476096 |
T |
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| Q |
202 |
gctgataacattctccaatatgtccataactctttttctagcctgaattaacacttgcaagttcaaattcccaa |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52476097 |
gctgataacattctccaatatgtccataactctttttctagcctgaattaacacttgcaagttcaaattcccaa |
52476170 |
T |
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