View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18995_low_26 (Length: 252)
Name: NF18995_low_26
Description: NF18995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18995_low_26 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 52476184 - 52476405
Alignment:
| Q |
1 |
ctcaacataaaatattgtgactacttattggtattaaaaactccaataagttcaaattcatcaacaagttacccttcctttctaagcaaaagactccaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52476184 |
ctcaacataaaatattgtgactacttattggtattaaaaacc--------------ttcatcaacaagttacccttcctttctaagcaaaagactccaaa |
52476269 |
T |
|
| Q |
101 |
ttatatactgaaagttacttggatgatttgtataaccacctgaaggcccttgtagaatctggtccatggtaacctcaaagggaacgcaagcattgcttca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52476270 |
ttatatactgaaagttacttggatgatttgtataaccacctgtaggcccttgtagaatctggtccatggtaacctcaaagggaacgcaagcattgcttca |
52476369 |
T |
|
| Q |
201 |
gacacacgagcaacatccttgtgcatcattgctagt |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
52476370 |
gacacacgagcaacatccttgtgcatcattgctagt |
52476405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University