View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18995_low_30 (Length: 241)
Name: NF18995_low_30
Description: NF18995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18995_low_30 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 28733370 - 28733594
Alignment:
| Q |
1 |
ctgaagcagggcagttaaaatctgcactggatggtgccgaggtaagatatcagaatgagtatatccaaagcacattgcagattagaagtgcctttgaacg |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28733370 |
ctgaagcagggcagctaaaatctgcactggatggtgccgaggtaagatatcagaatgagtatatccaaagcacattgcagattagaagtgcctttgaacg |
28733469 |
T |
|
| Q |
101 |
actggagaacacgaaatcggaatcttatcaaagacaagctgaattatatgaggaattgaaaaaatctaaagccgatgttgaagagttaagggcacgactg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28733470 |
actggagaacacgaaatcggaatcttatcaaagacaagctgaattatatgaggaattgaaaaaatctaaagccgatgttgaagagttaagggcacgactg |
28733569 |
T |
|
| Q |
201 |
atggaaaaagaatctcatttgcaag |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
28733570 |
atggaaaaagaatctcatttgcaag |
28733594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 22110213 - 22110303
Alignment:
| Q |
1 |
ctgaagcagggcagttaaaatctgcactggatggtgccgaggtaagatatcagaatgagtatatccaaagcacattgcagattagaagtgc |
91 |
Q |
| |
|
|||||| || |||||| ||||||||| |||||| ||||||| ||||||| || | || || ||||| ||||||||||||||||||||||| |
|
|
| T |
22110213 |
ctgaagtagagcagttgaaatctgcattggatgttgccgagataagataccaagaagaatacatccagagcacattgcagattagaagtgc |
22110303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 40584376 - 40584286
Alignment:
| Q |
1 |
ctgaagcagggcagttaaaatctgcactggatggtgccgaggtaagatatcagaatgagtatatccaaagcacattgcagattagaagtgc |
91 |
Q |
| |
|
|||||| || |||||| ||||||||| |||||| ||||||| ||||||| || | || || ||||| ||||||||||||||||||||||| |
|
|
| T |
40584376 |
ctgaagtagagcagttgaaatctgcattggatgttgccgagataagataccaagaagaatacatccagagcacattgcagattagaagtgc |
40584286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University