View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18995_low_33 (Length: 237)

Name: NF18995_low_33
Description: NF18995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18995_low_33
NF18995_low_33
[»] chr7 (2 HSPs)
chr7 (1-222)||(34569386-34569607)
chr7 (1-100)||(6819978-6820078)
[»] chr5 (2 HSPs)
chr5 (4-91)||(37034571-37034659)
chr5 (1-30)||(5302374-5302403)
[»] chr3 (2 HSPs)
chr3 (1-91)||(36953146-36953236)
chr3 (1-92)||(16990665-16990756)
[»] chr6 (1 HSPs)
chr6 (1-98)||(8647998-8648096)
[»] chr2 (4 HSPs)
chr2 (1-98)||(20431501-20431600)
chr2 (1-90)||(29999022-29999112)
chr2 (1-59)||(16807288-16807347)
chr2 (1-59)||(16846569-16846628)
[»] chr8 (1 HSPs)
chr8 (1-46)||(31261574-31261619)
[»] chr4 (2 HSPs)
chr4 (5-79)||(25107185-25107259)
chr4 (1-78)||(15601849-15601925)


Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 34569386 - 34569607
Alignment:
Q  1 agttattgtattgaaaattgtgtaattaatattaaaaaagtcaaaatgtttctttttattataatacttaccttttttagcatccttaaccagcgcccta 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||  |||||    
T  34569386 agttattgtattgaaaattgtgtaattaatactaaaaaagtcaaaatatttctttttattataatacttaccttttttggcatacttaaccagtacccta 34569485  T
Q  101 agacaccaattagcattactcaatttaaaaaggtcttactcttcaagattgctttggccctattaatggttgagacggctgagctatgcacgtctttata 200  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34569486 agacaccagttagcattactcaatttaaaaaggtcttactcttcaagtttgctttggccctattaatggttgagacggctgagctatgcacgtctttata 34569585  T
Q  201 tattaacaagattcgtataaat 222  Q
    ||||||||||||||||||||||    
T  34569586 tattaacaagattcgtataaat 34569607  T

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Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 6819978 - 6820078
Alignment:
Q  1 agttattgtattgaaaattgtgtaattaatattaaaaaagtcaaaa-tgtttctttttattataatacttaccttttttagcatccttaaccagcgccct 99  Q
    ||||||||||| ||||| ||||||||||||| |||||||||||||| |||||| ||||||  ||||| |||||||||||||||||||||||||| |||||    
T  6819978 agttattgtatagaaaactgtgtaattaatactaaaaaagtcaaaaatgtttcattttatggtaataattaccttttttagcatccttaaccagtgccct 6820077  T
Q  100 a 100  Q
    |    
T  6820078 a 6820078  T

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Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 37034659 - 37034571
Alignment:
Q  4 tattgtattgaaaattgtgtaattaatattaaaaaagtc-aaaatgtttctttttattataatacttaccttttttagcatccttaacc 91  Q
    ||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||| ||||| ||||||    
T  37034659 tattgcattgaaaactgtgtaattaatattaaaaaagtcaaaaatgtttctttttatgataataattaccttttttggcatctttaacc 37034571  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 5302403 - 5302374
Alignment:
Q  1 agttattgtattgaaaattgtgtaattaat 30  Q
    ||||||||||||||||||||||||||||||    
T  5302403 agttattgtattgaaaattgtgtaattaat 5302374  T

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Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 36953236 - 36953146
Alignment:
Q  1 agttattgtattgaaaattgtgtaattaatattaaaaaagtcaaa-atgtttctttttattataatacttaccttttttagcatccttaacc 91  Q
    |||||||| |||||||||||||||||||||| ||||||||||||| ||||||| ||||||  ||||||||||| ||||| ||||||||||||    
T  36953236 agttattgcattgaaaattgtgtaattaatactaaaaaagtcaaacatgtttccttttatggtaatacttacc-tttttggcatccttaacc 36953146  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 16990756 - 16990665
Alignment:
Q  1 agttattgtattgaaaattgtgtaattaatattaaaaaagtcaaaa-tgtttctttttattataatacttaccttttttagcatccttaacca 92  Q
    |||||||| ||| ||||| |||||||||||| || |||||| |||| ||||| ||||||| |||||| || |||||||||||||  |||||||    
T  16990756 agttattgcattaaaaat-gtgtaattaatactacaaaagtaaaaaatgtttttttttatgataataatttccttttttagcatgtttaacca 16990665  T

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Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 8648096 - 8647998
Alignment:
Q  1 agttattgtattgaaaa-ttgtgtaattaatattaaaaaagtcaaaatgtttctttttattataatacttaccttttttagcatccttaaccagcgccc 98  Q
    |||||||| |||||||| |||||||||||||| ||||||||||||||| |||  ||||||  ||||| || ||||||||| ||||||||||||| ||||    
T  8648096 agttattgcattgaaaaattgtgtaattaatactaaaaaagtcaaaatattttattttatggtaataatttccttttttaacatccttaaccagtgccc 8647998  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 20431501 - 20431600
Alignment:
Q  1 agttattgtattgaaaattgtgtaattaata-ttaaaaaagtcaaaa-tgtttctttttattataatacttaccttttttagcatccttaaccagcgccc 98  Q
    |||||||| |||||||| ||||||||||||| | ||||||||||||| ||||   |||||| |||||| || |||||||| |||| ||||||||| ||||    
T  20431501 agttattgcattgaaaactgtgtaattaatactaaaaaaagtcaaaagtgttatcttttatgataataatttccttttttggcatacttaaccagtgccc 20431600  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 29999112 - 29999022
Alignment:
Q  1 agttattgtattgaaaattgtgtaattaatattaaaaaagtc-aaaatgtttctttttattataatacttaccttttttagcatccttaac 90  Q
    |||| ||| |||||||||||||||||||||| |||||||||| ||||| |||| ||||||  ||||| ||  || |||||||||| |||||    
T  29999112 agttcttgcattgaaaattgtgtaattaatactaaaaaagtcaaaaatatttccttttatactaataattttctcttttagcatcattaac 29999022  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 16807347 - 16807288
Alignment:
Q  1 agttattgtattgaaaattgtgtaattaatattaaaaaagtcaaa-atgtttctttttat 59  Q
    |||||||| |||||||| ||||||||||||| ||||||||| ||| ||||||| ||||||    
T  16807347 agttattgcattgaaaactgtgtaattaatactaaaaaagtaaaatatgtttccttttat 16807288  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 16846628 - 16846569
Alignment:
Q  1 agttattgtattgaaaattgtgtaattaatattaaaaaagtcaaa-atgtttctttttat 59  Q
    |||||||| |||||||| ||||||||||||| ||||||||| ||| ||||||| ||||||    
T  16846628 agttattgcattgaaaactgtgtaattaatactaaaaaagtaaaatatgtttccttttat 16846569  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 31261574 - 31261619
Alignment:
Q  1 agttattgtattgaaaattgtgtaattaatattaaaaaagtcaaaa 46  Q
    |||||||| ||||||||||||||||||||||||||||  |||||||    
T  31261574 agttattgcattgaaaattgtgtaattaatattaaaatggtcaaaa 31261619  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 79
Target Start/End: Complemental strand, 25107259 - 25107185
Alignment:
Q  5 attgtattgaaaattgtgtaattaatattaaaaaagtcaaaatgtttctttttattataatacttacctttttta 79  Q
    ||||||||||||||| |||||| |||| ||||||| | ||||| |||  ||||||  ||||| ||||||||||||    
T  25107259 attgtattgaaaattatgtaataaatactaaaaaatttaaaatattttcttttatattaataattacctttttta 25107185  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 15601849 - 15601925
Alignment:
Q  1 agttattgtattgaaaattgtgtaattaatattaaaaaagtcaaaatgtttctttttattataatacttacctttttt 78  Q
    |||||||||||  ||||||||||||||| | |||||| |   |||||||||||||||||  ||||| |||||||||||    
T  15601849 agttattgtataaaaaattgtgtaatta-tcttaaaagatcaaaaatgtttctttttatggtaatatttacctttttt 15601925  T

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