View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18995_low_34 (Length: 236)
Name: NF18995_low_34
Description: NF18995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18995_low_34 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 47651058 - 47651293
Alignment:
| Q |
1 |
ataattatcacgaacaaaaccatatcagcacaacttgtctacgaagcaccgacacatagagatacttaaaccgaacattacactaactttgatattgcga |
100 |
Q |
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| T |
47651058 |
ataattatcacgaacaaaaccatatcagcacaacttgtctacgaagcaccgacacatagagatacttaaaccgaacattacactaactttgatattgcga |
47651157 |
T |
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| Q |
101 |
caccagtaaaaacctgcaccaaactgctagagagctaaagacccaaggccagaacccccagacataaccaaaccacagtcaccacaaaacattaaacgga |
200 |
Q |
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| T |
47651158 |
caccagtaaaaacctgcaccaaactgctagagagctaaagacccaaggccagaacccccagacataaccaaaccacagtcaccacaaaacattaaacgga |
47651257 |
T |
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| Q |
201 |
caaatttgttatattaatacttaattcttccccttt |
236 |
Q |
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||||||||||| |||||||||||||||||||||||| |
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| T |
47651258 |
caaatttgttacattaatacttaattcttccccttt |
47651293 |
T |
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