View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18995_low_35 (Length: 227)
Name: NF18995_low_35
Description: NF18995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18995_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 4603889 - 4603689
Alignment:
| Q |
1 |
gccaaataaaaatgttattttgaaaataatgtactcttaatcatttnnnnnnnnnnnnnnngacttcttaaaagtttgtttaggggacttaaaagttaat |
100 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
4603889 |
gccaaataaaaatgttattttgaaaatactgtactcttaatcactttcaaaaaaaaa-----acttcttaaaagtttgtttaggggacttaaaagttaat |
4603795 |
T |
|
| Q |
101 |
aaatcgtggttatagcaaaaaatttctacttttttattctttaaaatgtttacttaaagcatatgnnnnnnnaaggaaagagcttaaagcatatgttagc |
200 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
4603794 |
aaatcgtggttatagcataaaatttctacttttttattctttaaaatgtttacttaaagcatatgtttttttaaggaaagaacttaaagcatatgttagc |
4603695 |
T |
|
| Q |
201 |
aaaacc |
206 |
Q |
| |
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|||||| |
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| T |
4603694 |
aaaacc |
4603689 |
T |
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