View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18995_low_38 (Length: 213)
Name: NF18995_low_38
Description: NF18995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18995_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 3e-90; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 17419556 - 17419735
Alignment:
| Q |
19 |
atagtatctatgtgcaggaattacttgcttgttacactgttgttggaacatatattgtattagggaagcaaaaatataaatgtgtgtaaggctctgcagt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17419556 |
atagtatctatgtgcaggaattacttgcttgttacactgttgttggaacatatattgtattagggaagcaaaaatataaatgtgtgtaaggctctgcagt |
17419655 |
T |
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| Q |
119 |
ggaagttcttatgattgctgatttcccccattagttgattgagctccttcaacagactgtgctgcacaattctgcctttg |
198 |
Q |
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| T |
17419656 |
ggaagttattatgattgctgatttcccccattagttgattgagctccttcaacagattgtgctgcacaattctgcatttg |
17419735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 80 - 198
Target Start/End: Original strand, 30225685 - 30225803
Alignment:
| Q |
80 |
agggaagcaaaaatataaatgtgtgtaaggctctgcagtggaagttcttatgattgctgatttcccccattagttgattgagctccttcaacagactgtg |
179 |
Q |
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||||||||||| | |||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
30225685 |
agggaagcaaagacataaatgtgtgtaatgctctgcagtgcaagttcttatgattgctgatttccgccattagttgattgagctccttcaacagattgtg |
30225784 |
T |
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| Q |
180 |
ctgcacaattctgcctttg |
198 |
Q |
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| T |
30225785 |
ctgcacaattctgcctttg |
30225803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 30247409 - 30247471
Alignment:
| Q |
28 |
atgtgcaggaattacttgcttgttacactgttgttggaacatatattgtattagggaagcaaa |
90 |
Q |
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| T |
30247409 |
atgtgctggaatcacttgcttattacactgttgttggaacatatattgagtgagggaagcaaa |
30247471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 198
Target Start/End: Original strand, 30247474 - 30247525
Alignment:
| Q |
147 |
cattagttgattgagctccttcaacagactgtgctgcacaattctgcctttg |
198 |
Q |
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| T |
30247474 |
cattagttgattgagcttcttcaacagatagtgctgcacagttctccctttg |
30247525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 107; Significance: 8e-54; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 26705531 - 26705353
Alignment:
| Q |
20 |
tagtatctatgtgcaggaattacttgcttgttacactgttgttggaacatatattgtattagggaagcaaaaatataaatgtgtgtaaggctctgcagtg |
119 |
Q |
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|||||||| ||| |||||||||||| ||| ||||| ||| |||||||||||||| | ||||||||||| |||||||||||||||| ||||| || || |
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| T |
26705531 |
tagtatctctgttcaggaattacttacttaatacacagtttatggaacatatattgagtgagggaagcaaagatataaatgtgtgtaatgctctacaatg |
26705432 |
T |
|
| Q |
120 |
gaagttcttatgattgctgatttcccccattagttgattgagctccttcaacagactgtgctgcacaattctgcctttg |
198 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
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| T |
26705431 |
gaagttcttatgattgctgatttcccccattagttgattgagcttcttcaacagatagtgctgcacaattctgcctttg |
26705353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 5994737 - 5994636
Alignment:
| Q |
20 |
tagtatctatgtgcaggaattacttgcttgttacactgttgttggaacatatattgtattagggaagcaaaaatataaatgtgtgtaaggctctgcagtg |
119 |
Q |
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|||| ||||| ||||||||| |||||||| |||||| ||| ||||||||| |||| | || ||||| | ||||||||||||||| |||| |||||| |
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| T |
5994737 |
tagtttctatttgcaggaatcacttgcttattacacagttactggaacatactttgtgtgagtgaagccgatatataaatgtgtgtagtgctcagcagtg |
5994638 |
T |
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| Q |
120 |
ga |
121 |
Q |
| |
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|| |
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| T |
5994637 |
ga |
5994636 |
T |
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