View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18995_low_6 (Length: 484)

Name: NF18995_low_6
Description: NF18995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18995_low_6
NF18995_low_6
[»] chr6 (2 HSPs)
chr6 (1-314)||(26014046-26014371)
chr6 (320-468)||(26015275-26015423)
[»] chr4 (3 HSPs)
chr4 (1-314)||(56108279-56108604)
chr4 (320-468)||(56109509-56109657)
chr4 (23-161)||(20646349-20646487)
[»] chr7 (1 HSPs)
chr7 (6-314)||(6965555-6965876)
[»] chr3 (1 HSPs)
chr3 (1-317)||(33002266-33002593)
[»] chr2 (5 HSPs)
chr2 (1-317)||(25829995-25830323)
chr2 (67-318)||(26397437-26397700)
chr2 (11-161)||(26459951-26460101)
chr2 (208-318)||(26460163-26460273)
chr2 (244-316)||(19219943-19220015)
[»] scaffold0182 (2 HSPs)
scaffold0182 (67-161)||(29891-29985)
scaffold0182 (208-318)||(29722-29832)
[»] scaffold0006 (1 HSPs)
scaffold0006 (67-318)||(276832-277095)
[»] chr1 (5 HSPs)
chr1 (71-143)||(845527-845599)
chr1 (1-164)||(30400122-30400286)
chr1 (1-164)||(30406679-30406843)
chr1 (243-317)||(30400370-30400444)
chr1 (243-317)||(30406927-30407001)


Alignment Details
Target: chr6 (Bit Score: 157; Significance: 3e-83; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 26014046 - 26014371
Alignment:
Q  1 tatgaaaacattggttgtttgcagaaagatatcagaaatcatttagatatacgtcggcgtttggcattagaatcagaagatgcaaatgcaatgttggagt 100  Q
    ||||||||||||||||| ||| |||||||| | ||||| |||||||||| | ||||||||||||| |||||||| | ||||||||||||||||||||| |    
T  26014046 tatgaaaacattggttgcttggagaaagatgtaagaaaccatttagataaaggtcggcgtttggctttagaatctggagatgcaaatgcaatgttggatt 26014145  T
Q  101 gttttatgctcatgcaagaagaaaatacaagattcttttatgcaattgatttgaatgatgaggaccgcatacaaa------------tggatgcgaaaag 188  Q
    |||||||||||||||||||||||| | || |||||||||||||||||||| || |||||||||  |||||  |||            ||||||| ||| |    
T  26014146 gttttatgctcatgcaagaagaaagtccaggattcttttatgcaattgatatggatgatgagggtcgcatgaaaaatgtattttgggtggatgcaaaagg 26014245  T
Q  189 tagagaagattatcaataatttggaggtgtgatttcatttgctactacgtatatcacaaataaatacaaaatgtcatttgctccttttattggtgtaaac 288  Q
    ||||||||| |||||| | ||||||| |||||||||||||| |||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  26014246 tagagaagactatcaagagtttggagatgtgatttcatttgatactacatatatcacaaataagtacaaaatgccatttgctccttttattggtgtaaac 26014345  T
Q  289 agtcactttcagtcaaggttacttgg 314  Q
    | ||||||||| ||||||||||||||    
T  26014346 aatcactttcaatcaaggttacttgg 26014371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 320 - 468
Target Start/End: Original strand, 26015275 - 26015423
Alignment:
Q  320 agaagcaagcatcatacaaggaaaatgaaagaaaacatgtgttctagtaaggagagatatgatagtttatataaaaagggtattgaatttctcgaagaag 419  Q
    |||||||||||||||||||||| ||||||| || |  ||||||||||||||||||||||||||  ||||||| |||||| ||||||||||||||||||||    
T  26015275 agaagcaagcatcatacaaggataatgaaaaaagatgtgtgttctagtaaggagagatatgattctttatatcaaaaggctattgaatttctcgaagaag 26015374  T
Q  420 gatcattgagttttgagagttacaatttggcttgccatgcacttgaaga 468  Q
    ||||  | |||||||||||||||||||||||||||||||||||||||||    
T  26015375 gatcgctaagttttgagagttacaatttggcttgccatgcacttgaaga 26015423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 153; Significance: 7e-81; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 56108279 - 56108604
Alignment:
Q  1 tatgaaaacattggttgtttgcagaaagatatcagaaatcatttagatatacgtcggcgtttggcattagaatcagaagatgcaaatgcaatgttggagt 100  Q
    ||||||||||||||||| ||| |||||||| | ||||| |||||||||| | ||||||||||||| |||||||| | |||||||||||||||||| || |    
T  56108279 tatgaaaacattggttgcttggagaaagatgtaagaaaccatttagataaaggtcggcgtttggctttagaatctggagatgcaaatgcaatgttagatt 56108378  T
Q  101 gttttatgctcatgcaagaagaaaatacaagattcttttatgcaattgatttgaatgatgaggaccgcatacaaa------------tggatgcgaaaag 188  Q
    |||||||||||||||||||||||| | || |||||||||||||||||||| || |||||||||  |||||  |||            ||||||| ||| |    
T  56108379 gttttatgctcatgcaagaagaaagtccaggattcttttatgcaattgatatggatgatgagggtcgcatgaaaaatgtattttgggtggatgcaaaagg 56108478  T
Q  189 tagagaagattatcaataatttggaggtgtgatttcatttgctactacgtatatcacaaataaatacaaaatgtcatttgctccttttattggtgtaaac 288  Q
    ||||||||| |||||| | ||||||| |||||||||||||| |||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  56108479 tagagaagactatcaagagtttggagatgtgatttcatttgatactacatatatcacaaataagtacaaaatgccatttgctccttttattggtgtaaac 56108578  T
Q  289 agtcactttcagtcaaggttacttgg 314  Q
    | ||||||||| ||||||||||||||    
T  56108579 aatcactttcaatcaaggttacttgg 56108604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 320 - 468
Target Start/End: Original strand, 56109509 - 56109657
Alignment:
Q  320 agaagcaagcatcatacaaggaaaatgaaagaaaacatgtgttctagtaaggagagatatgatagtttatataaaaagggtattgaatttctcgaagaag 419  Q
    |||||||||||||||||||||| |||||||||| |  ||||||||||||||||||||||||||  ||||||| |||||| |||||||||||| |||||||    
T  56109509 agaagcaagcatcatacaaggataatgaaagaagatgtgtgttctagtaaggagagatatgattctttatatcaaaaggctattgaatttcttgaagaag 56109608  T
Q  420 gatcattgagttttgagagttacaatttggcttgccatgcacttgaaga 468  Q
    ||||  | |||||||||||||||||||||||||||||||||||||||||    
T  56109609 gatcgctaagttttgagagttacaatttggcttgccatgcacttgaaga 56109657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 23 - 161
Target Start/End: Complemental strand, 20646487 - 20646349
Alignment:
Q  23 agaaagatatcagaaatcatttagatatacgtcggcgtttggcattagaatcagaagatgcaaatgcaatgttggagtgttttatgctcatgcaagaaga 122  Q
    |||||||||| ||||||| ||||||||    ||  |||||| | || ||||||| ||||||||||||||||||||||||||||| ||| ||||||||| |    
T  20646487 agaaagatattagaaatcttttagataaggatcatcgtttgactttggaatcaggagatgcaaatgcaatgttggagtgttttacgcttatgcaagaaaa 20646388  T
Q  123 aaatacaagattcttttatgcaattgatttgaatgatga 161  Q
    |||| |||||||||||||||| || |||||| |||||||    
T  20646387 aaattcaagattcttttatgcgatggatttggatgatga 20646349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 149; Significance: 2e-78; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 6 - 314
Target Start/End: Original strand, 6965555 - 6965876
Alignment:
Q  6 aaacattggttgtttgcagaaagatatcagaaatcatttagatatacgtcggcgtttggcattagaatcagaagatgcaaatgcaatgttggagtgtttt 105  Q
    |||||||||||| ||| |||||||| | ||||| |||||||||| | ||||||||||||| |||||||||| ||||||||||||||||||||| ||||||    
T  6965555 aaacattggttgcttggagaaagatgtaagaaaccatttagataaaggtcggcgtttggctttagaatcaggagatgcaaatgcaatgttggattgtttt 6965654  T
Q  106 atgctcatgcaagaagaaaatacaagattcttttatgcaattgatttgaatgatgaggaccgcat-acaaat------------ggatgcgaaaagtaga 192  Q
    ||||||||||||||||||||| || |||||||||||||||||||| || |||||||||  ||||| | ||||            | |||| ||| |||||    
T  6965655 atgctcatgcaagaagaaaatccaggattcttttatgcaattgatatggatgatgagggtcgcatgaaaaatgtattttgggtcgcatgcaaaaggtaga 6965754  T
Q  193 gaagattatcaataatttggaggtgtgatttcatttgctactacgtatatcacaaataaatacaaaatgtcatttgctccttttattggtgtaaacagtc 292  Q
    ||| | |||||| | ||||||| |||||||||||||| |||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||    
T  6965755 gaacactatcaagagtttggagatgtgatttcatttgatactacatataccacaaataagtacaaaatgtcatttgctccttttattggtgtaaacaatc 6965854  T
Q  293 actttcagtcaaggttacttgg 314  Q
    ||||||| ||||||||||||||    
T  6965855 actttcaatcaaggttacttgg 6965876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 33002266 - 33002593
Alignment:
Q  1 tatgaaaacattggttgtttgcagaaagatatcagaaatcatttagatatacgtcggcgtttggcattagaatcagaagatgcaaatgcaatgttggagt 100  Q
    |||||||||||||| || ||| ||||||| || |||||||||||||||| | |||| |||||||||||||| || | ||||||||   ||||||||||||    
T  33002266 tatgaaaacattggatgcttggagaaagacattagaaatcatttagataaaagtcgtcgtttggcattagagtcgggagatgcaacaacaatgttggagt 33002365  T
Q  101 gttttatgctcatgcaagaagaaaatacaagattcttttatgcaattgatttgaatgatgaggaccgcatacaaa------------tggatgcgaaaag 188  Q
    |||||||||| ||||||||||||||| | ||||| |||||||||||||||||| ||||||| || ||  ||  ||            ||||||| ||| |    
T  33002366 gttttatgcttatgcaagaagaaaatcctagatt-ttttatgcaattgatttggatgatgaagatcgtgtaagaaacgtattttgggtggatgcaaaagg 33002464  T
Q  189 tagagaagattatcaataatttggaggtgtgatttcatttgctactacgtatatcacaaataaatacaaaatgtcatttgctccttttattggtgtaaac 288  Q
    |||||| ||||||||| ||||||||| |||||||||||| | ||| || |||||||||||||| ||||||||| |||||||||||||||||||||| ||     
T  33002465 tagagatgattatcaagaatttggagatgtgatttcattcgatacaacatatatcacaaataagtacaaaatgccatttgctccttttattggtgtgaat 33002564  T
Q  289 agtcactttcagtcaaggttacttggttg 317  Q
    | ||||||||||||||||||| |||||||    
T  33002565 aatcactttcagtcaaggttatttggttg 33002593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 120; Significance: 3e-61; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 25830323 - 25829995
Alignment:
Q  1 tatgaaaacattggttgtttgcagaaagatatcagaaatcatttagatatacgtcggcgtttggcattagaatcagaagatgcaaatgcaatgttggagt 100  Q
    |||||||||||| | || ||| ||||||| || |||||||||||||||| | |||| |||||||||||||| || | ||| ||||   ||||||||||||    
T  25830323 tatgaaaacattagctgcttggagaaagacattagaaatcatttagataaaagtcgtcgtttggcattagagtcgggagaagcaacaacaatgttggagt 25830224  T
Q  101 gttttatgctcatgcaagaagaaaatacaagattcttttatgcaattgatttgaatgatgaggaccgcatacaaa------------tggatgcgaaaag 188  Q
    |||||||||| ||||||||||||||| | ||||| |||||||||||||||||| ||||||| || ||  ||  ||            ||||||| ||| |    
T  25830223 gttttatgcttatgcaagaagaaaatcctagatttttttatgcaattgatttggatgatgaagatcgtgtaagaaatgtgttttggatggatgcaaaagg 25830124  T
Q  189 tagagaagattatcaataatttggaggtgtgatttcatttgctactacgtatatcacaaataaatacaaaatgtcatttgctccttttattggtgtaaac 288  Q
    |||||| |||||| || ||||||||| |||||||||||| | ||| || |||||||||||||| ||||||| |||||||||||||||||||||||| ||     
T  25830123 tagagatgattataaagaatttggagatgtgatttcattcggtacaacatatatcacaaataagtacaaaacgtcatttgctccttttattggtgtgaat 25830024  T
Q  289 agtcactttcagtcaaggttacttggttg 317  Q
    | |||||||||||||||||||||||||||    
T  25830023 aatcactttcagtcaaggttacttggttg 25829995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 67 - 318
Target Start/End: Complemental strand, 26397700 - 26397437
Alignment:
Q  67 ttagaatcagaagatgcaaatgcaatgttggagtgttttatgctcatgcaagaagaaaatacaagattcttttatgcaattgatttgaatgatgaggacc 166  Q
    |||||||||| ||||||||| |||||| || ||| ||||||||  ||||||||||||||| ||||||||||||||||| |||||||| ||||||| |  |    
T  26397700 ttagaatcaggagatgcaaaggcaatgctgtagtattttatgcgtatgcaagaagaaaattcaagattcttttatgcatttgatttggatgatgatggtc 26397601  T
Q  167 gcatacaaa------------tggatgcgaaaagtagagaagattatcaataatttggaggtgtgatttcatttgctactacgtatatcacaaataaata 254  Q
    |  || |||            ||||||  ||  ||||||| |||||| ||   ||||||| ||||||||| |||| |||||| ||||||||||| |||||    
T  26397600 gtgtaaaaaatgtattttgggtggatggaaagggtagagatgattataaagtgtttggagatgtgatttcctttgatactacatatatcacaaacaaata 26397501  T
Q  255 caaaatgtcatttgctccttttattggtgtaaacagtcactttcagtcaaggttacttggttgt 318  Q
     |||||| |||||||||| || |||||||| || | ||||||||||||||| ||||| ||||||    
T  26397500 taaaatgccatttgctccattcattggtgtgaataatcactttcagtcaagattactcggttgt 26397437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 161
Target Start/End: Original strand, 26459951 - 26460101
Alignment:
Q  11 ttggttgtttgcagaaagatatcagaaatcatttagatatacgtcggcgtttggcattagaatcagaagatgcaaatgcaatgttggagtgttttatgct 110  Q
    ||||||| ||| |||||||||| | ||||| ||||||||    ||| |||||| | || ||||||| ||||||||||||||||||||| |||| || |||    
T  26459951 ttggttgcttggagaaagatattaaaaatcttttagataaggatcgtcgtttgactttggaatcaggagatgcaaatgcaatgttggaatgttgtacgct 26460050  T
Q  111 catgcaagaagaaaatacaagattcttttatgcaattgatttgaatgatga 161  Q
     |||||| || ||||| |||||||||||||||| || |||||| |||||||    
T  26460051 tatgcaaaaacaaaatccaagattcttttatgcgatggatttggatgatga 26460101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 208 - 318
Target Start/End: Original strand, 26460163 - 26460273
Alignment:
Q  208 tttggaggtgtgatttcatttgctactacgtatatcacaaataaatacaaaatgtcatttgctccttttattggtgtaaacagtcactttcagtcaaggt 307  Q
    ||||||| |||||| || |||| ||| || ||||||||||| ||||| ||||||||||||||||| || |||||||| || | ||||||||| ||||| |    
T  26460163 tttggagatgtgatatcttttgatacaacatatatcacaaacaaatataaaatgtcatttgctcccttcattggtgtgaataatcactttcaatcaagat 26460262  T
Q  308 tacttggttgt 318  Q
    | |||||||||    
T  26460263 tgcttggttgt 26460273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 244 - 316
Target Start/End: Complemental strand, 19220015 - 19219943
Alignment:
Q  244 acaaataaatacaaaatgtcatttgctccttttattggtgtaaacagtcactttcagtcaaggttacttggtt 316  Q
    |||||||| || |||||||||| | |||||||||||||||| || | | ||||||||||||||||||||||||    
T  19220015 acaaataagtataaaatgtcatgttctccttttattggtgtgaataataactttcagtcaaggttacttggtt 19219943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 67 - 161
Target Start/End: Complemental strand, 29985 - 29891
Alignment:
Q  67 ttagaatcagaagatgcaaatgcaatgttggagtgttttatgctcatgcaagaagaaaatacaagattcttttatgcaattgatttgaatgatga 161  Q
    |||||||||| |||||||||||||||| |||||| ||||||||  ||||||||||||||| ||||||||||||||||| |||||||| |||||||    
T  29985 ttagaatcaggagatgcaaatgcaatgctggagtattttatgcgtatgcaagaagaaaattcaagattcttttatgcatttgatttggatgatga 29891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 208 - 318
Target Start/End: Complemental strand, 29832 - 29722
Alignment:
Q  208 tttggaggtgtgatttcatttgctactacgtatatcacaaataaatacaaaatgtcatttgctccttttattggtgtaaacagtcactttcagtcaaggt 307  Q
    ||||||| ||||||||| |||| |||||| ||||||||||| ||||| |||||  |||||||||| || |||||||| || | ||||||||||||||| |    
T  29832 tttggagatgtgatttcctttgatactacatatatcacaaacaaatataaaataccatttgctccattcattggtgtgaataatcactttcagtcaagat 29733  T
Q  308 tacttggttgt 318  Q
    || | ||||||    
T  29732 taatcggttgt 29722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 67 - 318
Target Start/End: Complemental strand, 277095 - 276832
Alignment:
Q  67 ttagaatcagaagatgcaaatgcaatgttggagtgttttatgctcatgcaagaagaaaatacaagattcttttatgcaattgatttgaatgatgaggacc 166  Q
    |||||||||| ||||||||| |||||| || ||| |||||| |  ||||||||||||||| ||||||||||||||||| |||||||| ||||||| |  |    
T  277095 ttagaatcaggagatgcaaaggcaatgctgaagtattttatacgtatgcaagaagaaaattcaagattcttttatgcatttgatttggatgatgatggtc 276996  T
Q  167 gcatacaaa------------tggatgcgaaaagtagagaagattatcaataatttggaggtgtgatttcatttgctactacgtatatcacaaataaata 254  Q
    |  || |||            ||||||  ||  ||||||| |||||| ||   ||||||| ||||||||| |||| |||||| ||||||||||| |||||    
T  276995 gtgtaaaaaatgtattttgggtggatggaaagggtagagatgattataaagtgtttggagatgtgatttcctttgatactacatatatcacaaacaaata 276896  T
Q  255 caaaatgtcatttgctccttttattggtgtaaacagtcactttcagtcaaggttacttggttgt 318  Q
     |||||| |||||||| | || |||||||| || | ||||||||||||||| ||||| ||||||    
T  276895 taaaatgccatttgctacattcattggtgtgaataatcactttcagtcaagattactcggttgt 276832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 71 - 143
Target Start/End: Complemental strand, 845599 - 845527
Alignment:
Q  71 aatcagaagatgcaaatgcaatgttggagtgttttatgctcatgcaagaagaaaatacaagattcttttatgc 143  Q
    |||||| ||||||||||||||||||||||||||||| ||| ||||||||| ||||| ||||||||||||||||    
T  845599 aatcaggagatgcaaatgcaatgttggagtgttttacgcttatgcaagaacaaaattcaagattcttttatgc 845527  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 30400122 - 30400286
Alignment:
Q  1 tatgaaaacattggttgtttgcagaaagatatcagaaatcatttagatatacgtcggcgtttggc--attagaatcagaagatgcaaatgcaatgttgga 98  Q
    ||||||||||||||||| ||| ||||||| || |||||||||||||||| | |||| | ||||||   ||||| || | ||| |||| ||||||||||||    
T  30400122 tatgaaaacattggttgcttggagaaagacattagaaatcatttagataaaagtcgtcatttggctttttagagtcgggagacgcaactgcaatgttgga 30400221  T
Q  99 gtgttttatgctcatgcaagaagaaaatacaagattcttttatgcaattgatttgaatgatgagga 164  Q
    ||| |||||||| ||||||||| |||||   ||||| |||| ||  ||||||||  ||||||||||    
T  30400222 gtg-tttatgcttatgcaagaataaaatcttagatttttttgtgtgattgatttagatgatgagga 30400286  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 30406679 - 30406843
Alignment:
Q  1 tatgaaaacattggttgtttgcagaaagatatcagaaatcatttagatatacgtcggcgtttggc--attagaatcagaagatgcaaatgcaatgttgga 98  Q
    ||||||||||||||||| ||| ||||||| || |||||||||||||||| | |||| | ||||||   ||||| || | ||| |||| ||||||||||||    
T  30406679 tatgaaaacattggttgcttggagaaagacattagaaatcatttagataaaagtcgtcatttggctttttagagtcgggagacgcaactgcaatgttgga 30406778  T
Q  99 gtgttttatgctcatgcaagaagaaaatacaagattcttttatgcaattgatttgaatgatgagga 164  Q
    ||| |||||||| ||||||||| |||||   ||||| |||| ||  ||||||||  ||||||||||    
T  30406779 gtg-tttatgcttatgcaagaataaaatcttagatttttttgtgtgattgatttagatgatgagga 30406843  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 243 - 317
Target Start/End: Original strand, 30400370 - 30400444
Alignment:
Q  243 cacaaataaatacaaaatgtcatttgctccttttattggtgtaaacagtcactttcagtcaaggttacttggttg 317  Q
    |||||||||||||| | |||||||  |||||||||||||||  || | |||||||| ||||||||||||||||||    
T  30400370 cacaaataaatacatagtgtcattccctccttttattggtgagaataatcactttcggtcaaggttacttggttg 30400444  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 243 - 317
Target Start/End: Original strand, 30406927 - 30407001
Alignment:
Q  243 cacaaataaatacaaaatgtcatttgctccttttattggtgtaaacagtcactttcagtcaaggttacttggttg 317  Q
    |||||||||||||| | |||||||  |||||||||||||||  || | |||||||| ||||||||||||||||||    
T  30406927 cacaaataaatacatagtgtcattccctccttttattggtgagaataatcactttcggtcaaggttacttggttg 30407001  T

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