View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18995_low_9 (Length: 425)
Name: NF18995_low_9
Description: NF18995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18995_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 391; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 15 - 421
Target Start/End: Complemental strand, 7132099 - 7131693
Alignment:
| Q |
15 |
aataaagccacaggaagcataataccagctataccaaattgcaagccagggcaaattcttctacctgctccaaaaggaagatattcaaaattattccctc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7132099 |
aataaagccacaggaagcataataccagctataccaaattgcaagccagggcaaattcttctacctgctccaaaaggaagatattcaaaattattccctc |
7132000 |
T |
|
| Q |
115 |
taaaatcaatagtactaccttcaaatctctctggaataaacatctcagcatcagtccaatattgaggatcccttgccatagcccatacattaatcatgac |
214 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7131999 |
taaaatcaatagaactaccttcaaatctctctggattaaacatctcagcatcagtccaatattgaggatcccttgccatagcccatacattaatcatgac |
7131900 |
T |
|
| Q |
215 |
tttagtcttttttggtatatcataaccatcaatgttggttaattcagtgcattctctagggagtaataaaggagtaggtgagtgtaaccttaaggtctct |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7131899 |
tttagtcttttttggtatatcataaccatcaatgttggttaattcagtgcattctctagggagtaataaaggagtaggtgagtgtaaccttaaggtctct |
7131800 |
T |
|
| Q |
315 |
tttatcactaattttaggtatggaagttcttgaatatcattttcagatataatttcttttcctttgcatgcttctcttatttcagcttgtgctttgttca |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
7131799 |
tttatcactaattttaggtatggaagttcttgaatatcattttcagatataatttcttttcctttgcatgcttctcttatttcagcttgtgccttgttca |
7131700 |
T |
|
| Q |
415 |
tctcact |
421 |
Q |
| |
|
|| |||| |
|
|
| T |
7131699 |
tcacact |
7131693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 15 - 409
Target Start/End: Complemental strand, 7154593 - 7154199
Alignment:
| Q |
15 |
aataaagccacaggaagcataataccagctataccaaattgcaagccagggcaaattcttctacctgctccaaaaggaagatattcaaaattattccctc |
114 |
Q |
| |
|
|||||||| | ||||||||||| || ||||||||||||| || ||| || || |||||||| || || |||||||||| ||| ||||||||||| ||| |
|
|
| T |
7154593 |
aataaagcaagaggaagcataacactagctataccaaatgacatgcctggacacattcttcttccagcaccaaaaggaatatactcaaaattatttcctt |
7154494 |
T |
|
| Q |
115 |
taaaatcaatagtactaccttcaaatctctctggaataaacatctcagcatcagtccaatattgaggatcccttgccatagcccatacattaatcatgac |
214 |
Q |
| |
|
| |||||||| |||||| ||||| ||||||||||| |||||||||||||||||||||||||| ||||| ||||||| |||||| |||| ||||| || |
|
|
| T |
7154493 |
tgaaatcaatcaaactaccatcaaacctctctggaatgaacatctcagcatcagtccaatattgtggatctcttgccactgcccatgcatttatcatcac |
7154394 |
T |
|
| Q |
215 |
tttagtcttttttggtatatcataaccatcaatgttggttaattcagtgcattctctagggagtaataaaggagtaggtgagtgtaaccttaaggtctct |
314 |
Q |
| |
|
|||||| ||||||||||| ||||||||||| ||| |||| |||||||||||||||||||||| |||||||| | ||||| ||||||||| | || ||| |
|
|
| T |
7154393 |
tttagtattttttggtatttcataaccatctatgatggtcaattcagtgcattctctagggaccaataaaggtgaaggtgggtgtaacctcattgtttct |
7154294 |
T |
|
| Q |
315 |
tttatcactaattttaggtatggaagttcttgaatatcattttcagatataatttcttttcctttgcatgcttctcttatttcagcttgtgcttt |
409 |
Q |
| |
|
|| |||||||| || | ||| | ||||| | | |||| ||||||||| |||| ||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
7154293 |
ttgatcactaacttaaagtaagttagttcatttagatcagattcagatattattttctttcctttgaatgcttctcttagttcagcttgtgcttt |
7154199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 135 - 330
Target Start/End: Complemental strand, 7141703 - 7141508
Alignment:
| Q |
135 |
tcaaatctctctggaataaacatctcagcatcagtccaatattgaggatcccttgccatagcccatacattaatcatgactttagtcttttttggtatat |
234 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||| ||||||||| |||||| ||| | || ||||| |||| || | |||| |||| ||||||||||||| |
|
|
| T |
7141703 |
tcaaacctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccacgcatttataaagactgtagtattttttggtatat |
7141604 |
T |
|
| Q |
235 |
cataaccatcaatgttggttaattcagtgcattctctagggagtaataaaggagtaggtgagtgtaaccttaaggtctcttttatcactaatttta |
330 |
Q |
| |
|
|||| ||||| || ||||||| ||| |||| ||| || | || ||||||| ||||| ||||||||| || || ||||| |||||||| |||| |
|
|
| T |
7141603 |
catacccatctattttggttagttctgtgctcaatcttggaaccaacaaaggagaaggtgggtgtaacctcaatgtttctttgatcactaacttta |
7141508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University