View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18996_high_1 (Length: 708)
Name: NF18996_high_1
Description: NF18996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18996_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 17 - 313
Target Start/End: Complemental strand, 34674717 - 34674421
Alignment:
| Q |
17 |
ggatcatccacattgaattaaaagcaaccacacaaatgaaccggacactaatgagtttgtgggtcctcccacttataaaatgttcggcctctannnnnnn |
116 |
Q |
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| T |
34674717 |
ggatcatccacattgaattaaaagcaaccacacaaatgaaccggacactaatgagttcgtgggtcctcccacttataaaatgttcagcctctattttttt |
34674618 |
T |
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| Q |
117 |
naaacaatgtagaacttctaactcatttcacatttaccgtaatagaatttcttcaactatttgcacatgtctgtgtcaaggtcccgataaaatgaataaa |
216 |
Q |
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| T |
34674617 |
taaacaatgtagaacttctaactcatttcacatttaccgtaatagaatttcttcaactatttacacatgtctgtgtcaaggttccgataaaatgaataaa |
34674518 |
T |
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| Q |
217 |
atcatcgcattaaacttagcaaccataaaagtagtttagacactatatcaatgcttaagttgctgccgtcaaaaatagtagcaacaatatatattcc |
313 |
Q |
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| T |
34674517 |
atcatcgcattaaacttagcaaccataaaagtagtttagacactatatcaatgcttaagttgctgccgtaaaaaatagtagcaacaatatatattcc |
34674421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 365 - 693
Target Start/End: Complemental strand, 34674370 - 34674044
Alignment:
| Q |
365 |
ctatttctctcctaaaaatcacataggtttgtagaaaatgtaaatttgcaaaacttccaatgagttattggatgtaatttcttttctaaggtatacnnnn |
464 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34674370 |
ctatttctctcctaaacatcacataggtttgtagaaaatgtaaatttgcaaaacttccaatgagttattggatgtaatttcttttctaaggtatacaaaa |
34674271 |
T |
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| Q |
465 |
nnnnctatctctcatgtatcaatcattcatctgttgtctgtttcactccattgttcaaaaggtctacacnnnnnnnnnnnnnnnntgaaatcaaagtcta |
564 |
Q |
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| T |
34674270 |
aaaactatctctcatgtatcaatcattcatctgttgtctgtttcactccattgttcaaaaggtctacacaaaaataaaataaaaatgaaatcaaagtcta |
34674171 |
T |
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| Q |
565 |
atttgatcaatgcatgaaatgaaacagtgagttagacatagatagcatatgtggggaaaaataaaactaacaaaaacaccatacataggtgtggagaaat |
664 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34674170 |
atttgatcaatgcatgaaatgaaacagtgagttagacatagatagcat--gtggggaaaaataaaactaacaaaaacaccatacataggtgtggagaaat |
34674073 |
T |
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| Q |
665 |
gcttacacatgaaccagcagctccgttgt |
693 |
Q |
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| T |
34674072 |
gcttacacatgaaccagcagctccgttgt |
34674044 |
T |
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