View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18996_high_16 (Length: 340)
Name: NF18996_high_16
Description: NF18996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18996_high_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 47727954 - 47728281
Alignment:
| Q |
1 |
cccagcattaattgcttccacaatccttggactagccacttcatatccacttggacacaaacaaaatttacttagtcccattaattctgtatagttttga |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47727954 |
cccagcattaattgcttccacaattcttggactagccacttcatatccacttggacacaaacaaaatttacttagtcccattaattctgtatagttttga |
47728053 |
T |
|
| Q |
101 |
ccctttggaagatactcatgaacttgaacttgtgcatctttgttcttccaatgatttagtaataattttctaatgtcaccatgggccccaccagaaaaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47728054 |
ccctttggaagatactcatgaacttgaacttgtgcatctttgttcttccaatgatttagtaataattttctaatgtcaccatgggccccaccagaaaaga |
47728153 |
T |
|
| Q |
201 |
aggctaatatggttctgtttaatgggctttggcccagatttggtgggcctaactttccaactggtaagtacacttcagggatagacacatcccttttggg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47728154 |
aggctaatatggttctgtttaatgggctttggcccagatttggtgggcctaactttccaactggtaagtacacttcagggatagacacatcccttttggg |
47728253 |
T |
|
| Q |
301 |
ttggaacccttcagaagtgttggcattg |
328 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
47728254 |
ttggaacccttcagaagtgttggcattg |
47728281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 5 - 194
Target Start/End: Original strand, 47725786 - 47725975
Alignment:
| Q |
5 |
gcattaattgcttccacaatccttggactagccacttcatatccacttggacacaaacaaaatttacttagtcccattaattctgtatagttttgaccct |
104 |
Q |
| |
|
|||| |||||||||||| | |||||||| |||||||||| |||||| || ||||||||||| || ||||| ||||| || | |||||| | |||||| | |
|
|
| T |
47725786 |
gcataaattgcttccaccactcttggacttgccacttcatgtccactagggcacaaacaaaacttgcttagacccatcaactttgtataatcttgacctt |
47725885 |
T |
|
| Q |
105 |
ttggaagatactcatgaacttgaacttgtgcatctttgttcttccaatgatttagtaataattttctaatgtcaccatgggccccaccag |
194 |
Q |
| |
|
||||||| ||||||||||||||||||| | |||| |||| ||||||| || || ||| ||||||||| | ||||||||| ||||||| |
|
|
| T |
47725886 |
ttggaaggtactcatgaacttgaacttcttcatccttgtccttccaactcttgagcaatttttttctaatcttaccatgggcaccaccag |
47725975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 44629227 - 44629175
Alignment:
| Q |
14 |
gcttccacaatccttggactagccacttcatatccacttggacacaaacaaaa |
66 |
Q |
| |
|
|||||||| || |||||||| || |||||||| |||||||||||||||||||| |
|
|
| T |
44629227 |
gcttccactattcttggacttgctacttcataaccacttggacacaaacaaaa |
44629175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 49302338 - 49302286
Alignment:
| Q |
5 |
gcattaattgcttccacaatccttggactagccacttcatatccacttggaca |
57 |
Q |
| |
|
|||| ||||| ||||||||| ||||| |||||||||||| | ||||||||||| |
|
|
| T |
49302338 |
gcataaattgattccacaattcttgggctagccacttcaaaaccacttggaca |
49302286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University