View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18996_high_17 (Length: 331)
Name: NF18996_high_17
Description: NF18996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18996_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 22 - 326
Target Start/End: Original strand, 10181294 - 10181598
Alignment:
| Q |
22 |
tcaacatgtcttcttcagtttcatcatcttcatggaggaacaatattggtaatagtgtcatttcaattatattgaacgagaatatgataaatgaagtgga |
121 |
Q |
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| T |
10181294 |
tcaacatatcttcttcagtttcatcatcttcatggaggaacaatattggtaatagtgtcatttcaattatattgaaccagaatatgataaatgaagtgga |
10181393 |
T |
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| Q |
122 |
tgttgcaagtgaataatcaagtaatactactactcagtctcaaaataataacactacatggtagtactacgtggtagtactactcagtgtctaaaattaa |
221 |
Q |
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| T |
10181394 |
tgttgcaagtgaataaccaagtaatactactactcagtctcaaaataataacactgcatggtagtactacgtggtagtactactcaatgtctaaaattaa |
10181493 |
T |
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| Q |
222 |
tttgagattgagcaatagtactacttggacctgcacctacagcaacaacttcattcatcatgtgttggtttaacatagttgaaatgacgctattaccgat |
321 |
Q |
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| T |
10181494 |
tttgagattgagcaatagtactacttggacctgcacctacagcaacaacttcattcatcatgtgttggtttaacatagttgaaatgacgctattaccgat |
10181593 |
T |
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| Q |
322 |
atagt |
326 |
Q |
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||||| |
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| T |
10181594 |
atagt |
10181598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 192 - 306
Target Start/End: Original strand, 10343345 - 10343457
Alignment:
| Q |
192 |
gtggtagtactactcagtgtctaaaattaatttgagattgagcaatagtactacttggacctgcacctacagcaacaacttcattcatcatgtgttggtt |
291 |
Q |
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| T |
10343345 |
gtggtagtactactcaatctc--aaattaatttgagacagagtagtagtactatttggtcctgcgcctacatcaacaacttcatttattatgcgttggtt |
10343442 |
T |
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| Q |
292 |
taacatagttgaaat |
306 |
Q |
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| T |
10343443 |
caacatagttgaaat |
10343457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 10181637 - 10181572
Alignment:
| Q |
22 |
tcaacatgtcttcttcagtttcatcatcttcatggaggaacaatattggtaatagtgtcatttcaa |
87 |
Q |
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||||||||||||||| |||||||||| ||||||||||| || |||| |||||||| |||||||||| |
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| T |
10181637 |
tcaacatgtcttctttagtttcatcaacttcatggaggtactatatcggtaatagcgtcatttcaa |
10181572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 242 - 318
Target Start/End: Complemental strand, 10343309 - 10343233
Alignment:
| Q |
242 |
ctacttggacctgcacctacagcaacaacttcattcatcatgtgttggtttaacatagttgaaatgacgctattacc |
318 |
Q |
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|||||||| | ||||| | |||||||||||||| |||||||||||||||| |||||| ||||||||| || ||||| |
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| T |
10343309 |
ctacttggtcttgcacatgcagcaacaacttcaatcatcatgtgttggttccacatagatgaaatgacactgttacc |
10343233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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