View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18996_high_19 (Length: 317)
Name: NF18996_high_19
Description: NF18996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18996_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 14 - 288
Target Start/End: Complemental strand, 33954674 - 33954400
Alignment:
| Q |
14 |
agagatggatgtcattatgtaatagacaaggtacttccagatgaaatcaccacatattttgtcaagtctgaagaccaattggttgatatgttgaaaaatc |
113 |
Q |
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| T |
33954674 |
agagatggatgtcattatgtaatagacaaggtacttccagatgaaatcaccacatattttgtcaagtctgaagaccaattggttgatatattgaaaaata |
33954575 |
T |
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| Q |
114 |
gtttcaagactaaaaatttaaaagtttaaggataagttaaataaatttgaatttagtcgagaataaaaatgaaatttaagaatagtttaagtatatgttg |
213 |
Q |
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| T |
33954574 |
gtttgaagaccaaaaatttaaaagtttaaggataagttaaataaatttgaatttagtcgggaataaaaatgaaatttaaggatagtttaaggatatgttg |
33954475 |
T |
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| Q |
214 |
aaaaatcacctttttaaggactaaaaatgaaatttgatttatttatatggaataaaaattgatatcacctttata |
288 |
Q |
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| T |
33954474 |
aaaaatcacctttttaaggactaaaaatgaaatttgatttatttatatgcaataaaaattgatatcacctttata |
33954400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 9188167 - 9188217
Alignment:
| Q |
55 |
tgaaatcaccacatattttgtcaagtctgaagaccaattggttgatatgtt |
105 |
Q |
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| T |
9188167 |
tgaaatcaccacagattttgtcaagtttgaagaccaattggctgatatgtt |
9188217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 271
Target Start/End: Complemental strand, 3405477 - 3405436
Alignment:
| Q |
230 |
aggactaaaaatgaaatttgatttatttatatggaataaaaa |
271 |
Q |
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| T |
3405477 |
aggactaaaaatgaaatttgatatatttatagggactaaaaa |
3405436 |
T |
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