View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18996_high_3 (Length: 595)

Name: NF18996_high_3
Description: NF18996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18996_high_3
NF18996_high_3
[»] chr6 (5 HSPs)
chr6 (19-476)||(33630940-33631399)
chr6 (503-580)||(4792842-4792919)
chr6 (503-580)||(29873623-29873700)
chr6 (503-580)||(2017931-2018008)
chr6 (518-580)||(22516903-22516965)
[»] chr7 (3 HSPs)
chr7 (503-580)||(30504214-30504291)
chr7 (503-580)||(24279026-24279103)
chr7 (503-580)||(42437430-42437507)
[»] chr3 (9 HSPs)
chr3 (503-580)||(55094048-55094125)
chr3 (502-580)||(5635908-5635986)
chr3 (503-580)||(2182202-2182279)
chr3 (503-580)||(51225501-51225578)
chr3 (506-580)||(32771512-32771586)
chr3 (503-580)||(17257143-17257220)
chr3 (503-567)||(50380643-50380707)
chr3 (503-577)||(35494604-35494678)
chr3 (503-565)||(36316755-36316817)
[»] chr2 (7 HSPs)
chr2 (503-580)||(11364404-11364481)
chr2 (503-579)||(23048845-23048921)
chr2 (503-580)||(8667035-8667112)
chr2 (508-580)||(43890687-43890759)
chr2 (503-580)||(44077953-44078030)
chr2 (521-580)||(21632369-21632428)
chr2 (543-580)||(28720272-28720309)
[»] chr1 (7 HSPs)
chr1 (503-583)||(4475660-4475740)
chr1 (503-580)||(50503984-50504061)
chr1 (506-580)||(21259462-21259536)
chr1 (506-580)||(50877294-50877368)
chr1 (503-580)||(49695938-49696015)
chr1 (503-580)||(51548931-51549008)
chr1 (503-536)||(39277540-39277573)
[»] chr4 (8 HSPs)
chr4 (503-577)||(51543489-51543563)
chr4 (508-580)||(53060935-53061007)
chr4 (503-580)||(6033338-6033415)
chr4 (503-580)||(8143839-8143916)
chr4 (503-580)||(33167527-33167604)
chr4 (506-580)||(29775872-29775946)
chr4 (503-580)||(38829068-38829147)
chr4 (518-580)||(1139660-1139722)
[»] scaffold0854 (1 HSPs)
scaffold0854 (503-580)||(2798-2875)
[»] chr8 (5 HSPs)
chr8 (503-580)||(8348512-8348589)
chr8 (503-580)||(45309079-45309156)
chr8 (503-580)||(12279750-12279827)
chr8 (508-580)||(42074716-42074788)
chr8 (503-580)||(8951897-8951977)
[»] chr5 (4 HSPs)
chr5 (507-580)||(4887968-4888041)
chr5 (503-580)||(38163135-38163212)
chr5 (503-580)||(38973971-38974048)
chr5 (508-580)||(26365492-26365564)
[»] scaffold0016 (1 HSPs)
scaffold0016 (519-583)||(200903-200967)


Alignment Details
Target: chr6 (Bit Score: 357; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 19 - 476
Target Start/End: Complemental strand, 33631399 - 33630940
Alignment:
Q  19 gttttgtccatatactagtggtaccataacatagtttctcaattattgtttgatattattacctggtttcattggttttgatagctccaagatattctgt 118  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||| ||||||||| ||||||||||||    
T  33631399 gttttgtccatatactagtggtaccataacatactttctcaattattgtttgatattattaactggtttcaatggttgtgatagctcaaagatattctgt 33631300  T
Q  119 gatttcagaaacctgactaaacaaattcaaagcacctaacgaggaactaggaaggttttgaacttctttacagacacaca--tagtctatcactttacag 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |||| ||||    
T  33631299 gatttcagaaacctgactaaacaaattcaaagcacctaacgaggaactaggaaggttttgaacttctttacagacacacacatagtctattacttcacag 33631200  T
Q  217 aatgactttagcctccaannnnnnnncctttagtgctactagtgtttaatttactttactttgttttcctttctcttctcttctatgatatcacaaaaca 316  Q
    |||| |||||||||||||        | |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33631199 aatgtctttagcctccaattttttt-cttttactgctactggtgtttaatttactttactttgttttcctttctcttctcttctatgatatcacaaaaca 33631101  T
Q  317 aggttttattttgggaaactttagagcgatctataggttatgcctgagttatacttatggttgacagtataatatagtgtatattttaaaattgtgtact 416  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  33631100 aggttttattttgggaaactttagagtgatctataggttatgcctgagttatacttatggttgacagtatattatagtgtatattttaaaattgtgtact 33631001  T
Q  417 tattatttgggtgtaaaacaagtggtctctatgttcatttgtag-agactaatctctttga 476  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  33631000 tattatttgggagtaaaacaagtggtctctatgttcatttgtagcagactaatctctttga 33630940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 503 - 580
Target Start/End: Original strand, 4792842 - 4792919
Alignment:
Q  503 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgat 580  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||| |||||||||| |||||||||||||||||    
T  4792842 aacagagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacaatatgtgattgttctgat 4792919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 503 - 580
Target Start/End: Original strand, 29873623 - 29873700
Alignment:
Q  503 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgat 580  Q
    |||| ||||||||| |||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||    
T  29873623 aacaaagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacagtatgtgattgttctgat 29873700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 503 - 580
Target Start/End: Complemental strand, 2018008 - 2017931
Alignment:
Q  503 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgat 580  Q
    |||| ||||||||| |||||||||||||||||||  ||||||||||||| |||||| |||||||||||||||||||||    
T  2018008 aacaaagttgatgaggaaatataaatagaaactatcattatacttttaataatgtagacagtatgtgattgttctgat 2017931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 518 - 580
Target Start/End: Complemental strand, 22516965 - 22516903
Alignment:
Q  518 gaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgat 580  Q
    |||||||||||||||| ||  ||||||||||||| |||||||||| |||||||||||||||||    
T  22516965 gaaatataaatagaaaatatcattatacttttaataatgtaaacaatatgtgattgttctgat 22516903  T

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Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 503 - 580
Target Start/End: Original strand, 30504214 - 30504291
Alignment:
Q  503 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgat 580  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||    
T  30504214 aacagagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacagtatgtgattgttctgat 30504291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 503 - 580
Target Start/End: Complemental strand, 24279103 - 24279026
Alignment:
Q  503 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgat 580  Q
    |||||||||||||| |||||||||||| ||||||  ||||||||||||| ||||||||||||||||||||||||||||    
T  24279103 aacagagttgatgaggaaatataaatataaactatcattatacttttaataatgtaaacagtatgtgattgttctgat 24279026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 503 - 580
Target Start/End: Complemental strand, 42437507 - 42437430
Alignment:
Q  503 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgat 580  Q
    |||| ||||||||| |||||||||||||||||||  ||||||||||||| |||||||||||||||| |||||||||||    
T  42437507 aacatagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacagtatgtcattgttctgat 42437430  T

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Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 503 - 580
Target Start/End: Complemental strand, 55094125 - 55094048
Alignment:
Q  503 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgat 580  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||    
T  55094125 aacagagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacagtatgtgattgttctgat 55094048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 502 - 580
Target Start/End: Original strand, 5635908 - 5635986
Alignment:
Q  502 aaacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgat 580  Q
    ||||||||||||||| | |||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||    
T  5635908 aaacagagttgatgatggaatataaatagaaactaccattatacttttaataatgtaaacaatatgtgattgttctgat 5635986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 503 - 580
Target Start/End: Complemental strand, 2182279 - 2182202
Alignment:
Q  503 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgat 580  Q
    |||||||||||||| ||||||||||| |||||||  ||||||||||||| ||||||||||||||||||||||||||||    
T  2182279 aacagagttgatgaggaaatataaattgaaactatcattatacttttaataatgtaaacagtatgtgattgttctgat 2182202  T

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Target: chr3; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 503 - 580
Target Start/End: Original strand, 51225501 - 51225578
Alignment:
Q  503 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgat 580  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||| |||||||| |||||||||||||||||||    
T  51225501 aacagagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaatagtatgtgattgttctgat 51225578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 506 - 580
Target Start/End: Complemental strand, 32771586 - 32771512
Alignment:
Q  506 agagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgat 580  Q
    ||||||||||| |||||||||||||||||||  ||||||||||||| |||||||||| |||||||||||||||||    
T  32771586 agagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacaatatgtgattgttctgat 32771512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 503 - 580
Target Start/End: Original strand, 17257143 - 17257220
Alignment:
Q  503 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgat 580  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||| |||||||||| ||| |||||||||||||    
T  17257143 aacagagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacattatttgattgttctgat 17257220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 503 - 567
Target Start/End: Original strand, 50380643 - 50380707
Alignment:
Q  503 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatg 567  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||| |||||||||||||||    
T  50380643 aacagagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacagtatg 50380707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 503 - 577
Target Start/End: Complemental strand, 35494678 - 35494604
Alignment:
Q  503 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttct 577  Q
    ||||||| |||||| ||||||||||| |||||||  ||||||||||||| |||||||| ||||||||||||||||    
T  35494678 aacagagatgatgaggaaatataaattgaaactatcattatacttttaataatgtaaatagtatgtgattgttct 35494604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 503 - 565
Target Start/End: Complemental strand, 36316817 - 36316755
Alignment:
Q  503 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagta 565  Q
    |||||||||||||| |||||||||||| ||| ||  ||||||||||||| |||||||||||||    
T  36316817 aacagagttgatgaggaaatataaatataaagtatcattatacttttaataatgtaaacagta 36316755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 503 - 580
Target Start/End: Original strand, 11364404 - 11364481
Alignment:
Q  503 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgat 580  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||    
T  11364404 aacagagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacagtatgtgattgttctgat 11364481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 503 - 579
Target Start/End: Original strand, 23048845 - 23048921
Alignment:
Q  503 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctga 579  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||    
T  23048845 aacagagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacagtatgtgattgttctga 23048921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 503 - 580
Target Start/End: Complemental strand, 8667112 - 8667035
Alignment:
Q  503 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgat 580  Q
    |||||||||||||| ||||||||||| |||||||  ||||||||||||| ||||||||||||||||||||||| ||||    
T  8667112 aacagagttgatgaggaaatataaattgaaactatcattatacttttaataatgtaaacagtatgtgattgttatgat 8667035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 508 - 580
Target Start/End: Original strand, 43890687 - 43890759
Alignment:
Q  508 agttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgat 580  Q
    ||||||||| |||||||||||||||||||  ||||||||||||| |||||||| |||||||||||||||||||    
T  43890687 agttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaatagtatgtgattgttctgat 43890759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 503 - 580
Target Start/End: Complemental strand, 44078030 - 44077953
Alignment:
Q  503 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgat 580  Q
    |||| |||||||||  ||||||||||||||||||  ||||||||||| | |||||||||| |||||||||||||||||    
T  44078030 aacatagttgatgagaaaatataaatagaaactatcattatacttttgataatgtaaacaatatgtgattgttctgat 44077953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 521 - 580
Target Start/End: Original strand, 21632369 - 21632428
Alignment:
Q  521 atataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgat 580  Q
    ||||||||||||| ||  ||||||||||||| ||||||||||||||||||||||| ||||    
T  21632369 atataaatagaaaatatcattatacttttaataatgtaaacagtatgtgattgttttgat 21632428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 580
Target Start/End: Complemental strand, 28720309 - 28720272
Alignment:
Q  543 tacttttaacaatgtaaacagtatgtgattgttctgat 580  Q
    ||||||||| |||||||| |||||||||||||||||||    
T  28720309 tacttttaataatgtaaaaagtatgtgattgttctgat 28720272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 7e-26; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 503 - 583
Target Start/End: Complemental strand, 4475740 - 4475660
Alignment:
Q  503 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatatt 583  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||| |||||||||| ||||||||||||||||||||    
T  4475740 aacagagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacaatatgtgattgttctgatatt 4475660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 503 - 580
Target Start/End: Original strand, 50503984 - 50504061
Alignment:
Q  503 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgat 580  Q
    ||||||||||||||  ||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||    
T  50503984 aacagagttgatgagaaaatataaatagaaactatcattatacttttaataatgtaaacagtatgtgattgttctgat 50504061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 506 - 580
Target Start/End: Complemental strand, 21259536 - 21259462
Alignment:
Q  506 agagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgat 580  Q
    ||||||||||| |||||||||| ||||||||  ||||||||||||| ||||||||||||||||||||||||||||    
T  21259536 agagttgatgaggaaatataaaaagaaactatcattatacttttaataatgtaaacagtatgtgattgttctgat 21259462  T

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Target: chr1; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 506 - 580
Target Start/End: Complemental strand, 50877368 - 50877294
Alignment:
Q  506 agagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgat 580  Q
    ||||||||||| |||||||||||||||||||  |||||||||||||  |||||||||||||||||||||||||||    
T  50877368 agagttgatgaggaaatataaatagaaactatcattatacttttaatgatgtaaacagtatgtgattgttctgat 50877294  T

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Target: chr1; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 503 - 580
Target Start/End: Original strand, 49695938 - 49696015
Alignment:
Q  503 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgat 580  Q
    ||||||||||||||  |||||||||||||||||   ||||||||||||| ||||||||||||||||||||||||||||    
T  49695938 aacagagttgatgagaaaatataaatagaaactgtcattatacttttaataatgtaaacagtatgtgattgttctgat 49696015  T

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Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 503 - 580
Target Start/End: Original strand, 51548931 - 51549008
Alignment:
Q  503 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgat 580  Q
    |||| ||||||||| |||||||||||||||||||  ||||||||||||| |||||||||| |||| ||||||||||||    
T  51548931 aacaaagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacaatatgcgattgttctgat 51549008  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 503 - 536
Target Start/End: Original strand, 39277540 - 39277573
Alignment:
Q  503 aacagagttgatgaagaaatataaatagaaacta 536  Q
    |||||||||||||| |||||||||||||||||||    
T  39277540 aacagagttgatgaggaaatataaatagaaacta 39277573  T

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Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 503 - 577
Target Start/End: Original strand, 51543489 - 51543563
Alignment:
Q  503 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttct 577  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||    
T  51543489 aacagagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacagtatgtgattgttct 51543563  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 508 - 580
Target Start/End: Original strand, 53060935 - 53061007
Alignment:
Q  508 agttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgat 580  Q
    ||||||||| |||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||    
T  53060935 agttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacagtatgtgattgttctgat 53061007  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 503 - 580
Target Start/End: Complemental strand, 6033415 - 6033338
Alignment:
Q  503 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgat 580  Q
    |||| ||||||||| |||||||||||||||||||  ||||||||||||| |||||||| |||||||||||||||||||    
T  6033415 aacaaagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaatagtatgtgattgttctgat 6033338  T

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Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 503 - 580
Target Start/End: Complemental strand, 8143916 - 8143839
Alignment:
Q  503 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgat 580  Q
    |||||||||||| | |||||||||||||||||||  ||||||||||||| |||||||||| |||||||||||||||||    
T  8143916 aacagagttgatcaggaaatataaatagaaactatcattatacttttaataatgtaaacattatgtgattgttctgat 8143839  T

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Target: chr4; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 503 - 580
Target Start/End: Complemental strand, 33167604 - 33167527
Alignment:
Q  503 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgat 580  Q
    |||| ||||||||| |||||||||||||||||||  ||||||||||||| |||||||| |||||||||||||||||||    
T  33167604 aacacagttgatgaggaaatataaatagaaactattattatacttttaataatgtaaatagtatgtgattgttctgat 33167527  T

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Target: chr4; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 506 - 580
Target Start/End: Original strand, 29775872 - 29775946
Alignment:
Q  506 agagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgat 580  Q
    ||||||||||| |||||||||||| ||||||  ||||||||||||| |||| |||||||||||||||||||||||    
T  29775872 agagttgatgaggaaatataaatataaactatcattatacttttaataatgcaaacagtatgtgattgttctgat 29775946  T

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Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 503 - 580
Target Start/End: Original strand, 38829068 - 38829147
Alignment:
Q  503 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaaca--gtatgtgattgttctgat 580  Q
    |||| ||||||||| |||||||||||||||||||  ||||||||||||| ||||||||||   |||||||||||||||||    
T  38829068 aacaaagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacaatatatgtgattgttctgat 38829147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 518 - 580
Target Start/End: Original strand, 1139660 - 1139722
Alignment:
Q  518 gaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgat 580  Q
    |||||||||||||||||||  ||||||||||||| |||||||||| |||||||||| ||||||    
T  1139660 gaaatataaatagaaactatcattatacttttaataatgtaaacattatgtgattggtctgat 1139722  T

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Target: scaffold0854 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0854
Description:

Target: scaffold0854; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 503 - 580
Target Start/End: Complemental strand, 2875 - 2798
Alignment:
Q  503 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgat 580  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||| |||||||||| |||||||||||||||||    
T  2875 aacagagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacaatatgtgattgttctgat 2798  T

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Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 503 - 580
Target Start/End: Complemental strand, 8348589 - 8348512
Alignment:
Q  503 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgat 580  Q
    |||||| ||||||| |||||||||||||||||||  |||||||||||||  |||||||||||||||||||||||||||    
T  8348589 aacagaattgatgaggaaatataaatagaaactatcattatacttttaattatgtaaacagtatgtgattgttctgat 8348512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 503 - 580
Target Start/End: Complemental strand, 45309156 - 45309079
Alignment:
Q  503 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgat 580  Q
    |||| ||||||||| |||||||||||||||||||  ||||| ||||||| ||||||||||||||||||||||||||||    
T  45309156 aacatagttgatgaggaaatataaatagaaactatcattatgcttttaataatgtaaacagtatgtgattgttctgat 45309079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 503 - 580
Target Start/End: Complemental strand, 12279827 - 12279750
Alignment:
Q  503 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgat 580  Q
    |||| ||||||||| ||||| |||||||||||||  ||||||||||||| |||||||| |||||||||||||||||||    
T  12279827 aacaaagttgatgaggaaatgtaaatagaaactatcattatacttttaataatgtaaatagtatgtgattgttctgat 12279750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 508 - 580
Target Start/End: Complemental strand, 42074788 - 42074716
Alignment:
Q  508 agttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgat 580  Q
    ||||||||| |||||||||||||||||||  ||||||||||||| ||||||||||||||  ||||||||||||    
T  42074788 agttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacagtatacgattgttctgat 42074716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 503 - 580
Target Start/End: Original strand, 8951897 - 8951977
Alignment:
Q  503 aacagagttgatgaagaaatataaatagaaact---acgattatacttttaacaatgtaaacagtatgtgattgttctgat 580  Q
    |||| ||||||||| ||||||||||||||||||   |  ||||||||||||| ||||||||||||||||||||||||||||    
T  8951897 aacatagttgatgaggaaatataaatagaaactatcataattatacttttaataatgtaaacagtatgtgattgttctgat 8951977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 507 - 580
Target Start/End: Original strand, 4887968 - 4888041
Alignment:
Q  507 gagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgat 580  Q
    ||||||| || |||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||    
T  4887968 gagttgacgaggaaatataaatagaaactatcattatacttttaataatgtaaacagtatgtgattgttctgat 4888041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 503 - 580
Target Start/End: Complemental strand, 38163212 - 38163135
Alignment:
Q  503 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgat 580  Q
    |||||||||||||| ||||||||||||||||||   ||||||||||||| |||||||||| |||||||||||||||||    
T  38163212 aacagagttgatgaggaaatataaatagaaactgtcattatacttttaataatgtaaacaatatgtgattgttctgat 38163135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 503 - 580
Target Start/End: Original strand, 38973971 - 38974048
Alignment:
Q  503 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgat 580  Q
    |||| ||||||||| |||||||||||||||||||   |||||||||||| ||||||||||||||||||||||||||||    
T  38973971 aacaaagttgatgaggaaatataaatagaaactatccttatacttttaataatgtaaacagtatgtgattgttctgat 38974048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 508 - 580
Target Start/End: Complemental strand, 26365564 - 26365492
Alignment:
Q  508 agttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgat 580  Q
    ||||||||| |||||||||||||||||||  ||||||||||||| |||| |||||||||||||||||||||||    
T  26365564 agttgatgaggaaatataaatagaaactatcattatacttttaataatgaaaacagtatgtgattgttctgat 26365492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 519 - 583
Target Start/End: Complemental strand, 200967 - 200903
Alignment:
Q  519 aaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatatt 583  Q
    ||||| ||||||||||||  | ||||||||||| |||||||| ||||||||||||||||||||||    
T  200967 aaatagaaatagaaactatcactatacttttaataatgtaaatagtatgtgattgttctgatatt 200903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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