View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18996_high_32 (Length: 246)
Name: NF18996_high_32
Description: NF18996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18996_high_32 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 2 - 246
Target Start/End: Original strand, 36328292 - 36328545
Alignment:
| Q |
2 |
taaccttttatggaaagtgaaattatcgataaactttgaaaaggattgttgtcactcac---------caccaacttnnnnnnngagagaatagtgaatg |
92 |
Q |
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| T |
36328292 |
taaccttttatggaaagtgaaattatcgataaactttgaaaaggattgttgtcgctcacgtataacaccaccaacttaaaaaaagagagaatagtgaatg |
36328391 |
T |
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| Q |
93 |
gagaaacttgggcacgatttaggtcaatttaaagtatatgcgtggaacaaactatccctaaaattaatggtaacaaattaaacaaactacacttaatttg |
192 |
Q |
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| T |
36328392 |
cagaaacttgggcacgatttttgtcaatttaaagtatatgcgtggaacaaactatccctaaaattaatggtaacaaattaaacaaactatacttaatttg |
36328491 |
T |
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| Q |
193 |
ttacgatattatatacgtggccgcctattatttatctcatgggttattgagcat |
246 |
Q |
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| T |
36328492 |
ttacgatattatacacgtggccgcctattatttatctcatgggttattgagcat |
36328545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 36314142 - 36314182
Alignment:
| Q |
12 |
tggaaagtgaaattatcgataaactttgaaaaggattgttg |
52 |
Q |
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| T |
36314142 |
tggaaagtgaaattatcaataaacttttaaaaggattgttg |
36314182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 36334210 - 36334253
Alignment:
| Q |
12 |
tggaaagtgaaattatcgataaactttgaaaaggattgttgtca |
55 |
Q |
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| T |
36334210 |
tggaaagtgaaaatatcaataaactttgaaaaggattattgtca |
36334253 |
T |
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