View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18996_high_39 (Length: 209)
Name: NF18996_high_39
Description: NF18996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18996_high_39 |
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| [»] chr1 (1 HSPs) |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 26086548 - 26086756
Alignment:
| Q |
1 |
tgtcatgtcacttctaatacgaattgtctgaattaacaatttatacatagttgttgtcttcgaccttggcatatgtgcaagtgtgggagcatcagcgact |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
26086548 |
tgtcatgtcacttctaatacgaattgtctgaattaacaatttatacatagttgttttcttcgaccttagcatatgtgcaagtgtgggagcatcagcgact |
26086647 |
T |
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| Q |
101 |
tccatgctagattttgctcctgcccttaataatatactcttgatctttggagtgcttgctatgtctaatgctgttttattctccaaattctttgcctcga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
26086648 |
tccatgctagattttgctcctgcccttaataatatactcttgatctttggagtgcttgctatgtctaatgctgttttgttctccaaattctttgcctcga |
26086747 |
T |
|
| Q |
201 |
aatttatac |
209 |
Q |
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||||||||| |
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| T |
26086748 |
aatttatac |
26086756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 72 - 209
Target Start/End: Complemental strand, 14727630 - 14727493
Alignment:
| Q |
72 |
tatgtgcaagtgtgggagcatcagcgacttccatgctagattttgctcctgcccttaataatatactcttgatctttggagtgcttgctatgtctaatgc |
171 |
Q |
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|||||||| |||||||||||||||||||||| |||||| ||||||||| | ||||||||||||||||| |||| ||| ||||||| |||||||||||| |
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| T |
14727630 |
tatgtgcacgtgtgggagcatcagcgacttctatgctatgttttgctccaacacttaataatatactcttcatctctggggtgcttgttatgtctaatgc |
14727531 |
T |
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| Q |
172 |
tgttttattctccaaattctttgcctcgaaatttatac |
209 |
Q |
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| T |
14727530 |
tgttttgttctccaaattcttttccttcaaatttatac |
14727493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 73 - 193
Target Start/End: Complemental strand, 28865830 - 28865710
Alignment:
| Q |
73 |
atgtgcaagtgtgggagcatcagcgacttccatgctagattttgctcctgcccttaataatatactcttgatctttggagtgcttgctatgtctaatgct |
172 |
Q |
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||||||| ||||||||||||| | |||||| | ||| | ||||| ||| || || |||||||||||||| |||| |||| ||||||||||||| |||||| |
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| T |
28865830 |
atgtgcacgtgtgggagcatctgtgacttctaagcttggttttgatccagcactgaataatatactcttaatctctggaatgcttgctatgtccaatgct |
28865731 |
T |
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| Q |
173 |
gttttattctccaaattcttt |
193 |
Q |
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| T |
28865730 |
gttttattctccaaattcttt |
28865710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 71 - 194
Target Start/End: Complemental strand, 26089131 - 26089008
Alignment:
| Q |
71 |
atatgtgcaagtgtgggagcatcagcgacttccatgctagattttgctcctgcccttaataatatactcttgatctttggagtgcttgctatgtctaatg |
170 |
Q |
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||||||| || |||||||||||||| || ||| ||||||| ||||||||| ||||||||||||||||| | | ||||||||||||||||||||||| |
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| T |
26089131 |
atatgtgaaattgtgggagcatcagtgatttctatgctaggttttgctccaaaacttaataatatactcttcacatctggagtgcttgctatgtctaatg |
26089032 |
T |
|
| Q |
171 |
ctgttttattctccaaattctttg |
194 |
Q |
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| T |
26089031 |
cggttttgttctccagattctttg |
26089008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 128 - 193
Target Start/End: Complemental strand, 15329678 - 15329613
Alignment:
| Q |
128 |
aataatatactcttgatctttggagtgcttgctatgtctaatgctgttttattctccaaattcttt |
193 |
Q |
| |
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||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
15329678 |
aataatatactcttgatctctggaatgcttgctatgtccaatgctgttttattctccaaattcttt |
15329613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 128 - 193
Target Start/End: Complemental strand, 15510047 - 15509982
Alignment:
| Q |
128 |
aataatatactcttgatctttggagtgcttgctatgtctaatgctgttttattctccaaattcttt |
193 |
Q |
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||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
15510047 |
aataatatactcttgatctctggaatgcttgctatgtccaatgctgttttattctccaaattcttt |
15509982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 125 - 197
Target Start/End: Complemental strand, 30648714 - 30648642
Alignment:
| Q |
125 |
cttaataatatactcttgatctttggagtgcttgctatgtctaatgctgttttattctccaaattctttgcct |
197 |
Q |
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|||||||||||||||||||||| ||| |||||||||||||||||||| ||||| ||||| ||||||||||| |
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| T |
30648714 |
cttaataatatactcttgatctctggcgtgcttgctatgtctaatgcggttttgttctcactattctttgcct |
30648642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 72 - 186
Target Start/End: Original strand, 6611070 - 6611184
Alignment:
| Q |
72 |
tatgtgcaagtgtgggagcatcagcgacttccatgctagattttgctcctgcccttaataatatactcttgatctttggagtgcttgctatgtctaatgc |
171 |
Q |
| |
|
||||||||||||||||| || || |||||| | ||||| ||||||||| | || ||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
6611070 |
tatgtgcaagtgtgggattatgagtgacttctaagctaggttttgctccaactctgaataacatactcttgatccgtggagtgcttgctatgtctaatgc |
6611169 |
T |
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| Q |
172 |
tgttttattctccaa |
186 |
Q |
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|||||| ||||||| |
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| T |
6611170 |
tgttttgctctccaa |
6611184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 72 - 207
Target Start/End: Original strand, 17292838 - 17292973
Alignment:
| Q |
72 |
tatgtgcaagtgtgggagcatcagcgacttccatgctagattttgctcctgcccttaataatatactcttgatctttggagtgcttgctatgtctaatgc |
171 |
Q |
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|||||||||||||||||||||| |||||| | ||||| ||||| ||| || || ||||| ||||||||| ||| | ||||| || ||||||||||| |
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| T |
17292838 |
tatgtgcaagtgtgggagcatccatgacttctaagctaggttttgatccagcactaaataagatactcttgttctctagagtggcggcaatgtctaatgc |
17292937 |
T |
|
| Q |
172 |
tgttttattctccaaattctttgcctcgaaatttat |
207 |
Q |
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|||||| |||||||||||||| |||| |||||||| |
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| T |
17292938 |
tgttttgttctccaaattcttcgccttcaaatttat |
17292973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 192
Target Start/End: Complemental strand, 4819792 - 4819672
Alignment:
| Q |
72 |
tatgtgcaagtgtgggagcatcagcgacttccatgctagattttgctcctgcccttaataatatactcttgatctttggagtgcttgctatgtctaatgc |
171 |
Q |
| |
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|||||||||||||||| |||| | |||||||| || || ||||||||| | ||| |||||||||||||||||| | ||| ||| |||||||||| |
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| T |
4819792 |
tatgtgcaagtgtgggtgcattggtgacttccaagccaggttttgctccaacacttgataatatactcttgatctctctagtcactgccatgtctaatga |
4819693 |
T |
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| Q |
172 |
tgttttattctccaaattctt |
192 |
Q |
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|||||| || ||||| ||||| |
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| T |
4819692 |
tgttttgttttccaagttctt |
4819672 |
T |
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