View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18996_high_40 (Length: 206)

Name: NF18996_high_40
Description: NF18996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18996_high_40
NF18996_high_40
[»] chr8 (31 HSPs)
chr8 (81-142)||(13783044-13783105)
chr8 (81-142)||(34892745-34892806)
chr8 (83-142)||(40740984-40741043)
chr8 (81-142)||(16939456-16939517)
chr8 (81-142)||(37656742-37656803)
chr8 (81-142)||(7120976-7121037)
chr8 (81-142)||(16940213-16940273)
chr8 (81-142)||(35205890-35205951)
chr8 (81-142)||(36345868-36345928)
chr8 (81-142)||(38134075-38134135)
chr8 (81-142)||(41471972-41472033)
chr8 (81-123)||(29034125-29034167)
chr8 (81-142)||(3086368-3086428)
chr8 (81-142)||(7121723-7121783)
chr8 (81-142)||(13782311-13782371)
chr8 (81-142)||(22961441-22961501)
chr8 (78-123)||(35206615-35206660)
chr8 (81-142)||(39207712-39207773)
chr8 (78-142)||(20861839-20861903)
chr8 (81-124)||(36595900-36595943)
chr8 (81-123)||(37655987-37656029)
chr8 (81-123)||(39513168-39513210)
chr8 (81-142)||(3085591-3085651)
chr8 (78-123)||(39512386-39512431)
chr8 (78-142)||(44885762-44885826)
chr8 (1-33)||(184309-184341)
chr8 (1-33)||(2335254-2335286)
chr8 (1-33)||(22014180-22014212)
chr8 (78-142)||(31745255-31745319)
chr8 (1-33)||(36677646-36677678)
chr8 (78-142)||(41471165-41471228)
[»] chr7 (21 HSPs)
chr7 (81-142)||(30846001-30846062)
chr7 (80-140)||(38555351-38555411)
chr7 (81-142)||(13644497-13644558)
chr7 (81-142)||(14101498-14101559)
chr7 (81-142)||(14411515-14411576)
chr7 (81-142)||(48001312-48001372)
chr7 (81-125)||(47751138-47751182)
chr7 (81-123)||(38555140-38555182)
chr7 (81-142)||(11886034-11886094)
chr7 (81-142)||(14102285-14102345)
chr7 (81-142)||(14412302-14412362)
chr7 (81-142)||(31512976-31513036)
chr7 (87-142)||(30846763-30846817)
chr7 (81-142)||(13645279-13645339)
chr7 (1-35)||(603711-603745)
chr7 (1-35)||(10097848-10097882)
chr7 (1-35)||(16636349-16636383)
chr7 (1-35)||(17459255-17459289)
chr7 (1-35)||(17593925-17593959)
chr7 (1-33)||(7004-7036)
chr7 (1-33)||(8153-8185)
[»] chr5 (15 HSPs)
chr5 (81-142)||(40789143-40789204)
chr5 (81-142)||(35671967-35672028)
chr5 (78-142)||(35282331-35282394)
chr5 (81-131)||(2169763-2169813)
chr5 (81-123)||(41622223-41622265)
chr5 (81-142)||(41622984-41623045)
chr5 (81-125)||(42912831-42912875)
chr5 (87-142)||(30966171-30966226)
chr5 (81-142)||(20743956-20744016)
chr5 (81-142)||(35671158-35671218)
chr5 (87-142)||(13580638-13580693)
chr5 (81-124)||(30192568-30192611)
chr5 (86-142)||(13581596-13581652)
chr5 (86-142)||(13589665-13589721)
chr5 (1-33)||(37814516-37814548)
[»] chr4 (20 HSPs)
chr4 (81-142)||(2449026-2449087)
chr4 (81-142)||(43176564-43176625)
chr4 (78-142)||(37856680-37856744)
chr4 (78-142)||(2449549-2449612)
chr4 (81-142)||(37296148-37296208)
chr4 (81-142)||(48806561-48806622)
chr4 (81-142)||(6092691-6092752)
chr4 (81-142)||(18884441-18884501)
chr4 (81-142)||(37855909-37855969)
chr4 (81-142)||(43175783-43175843)
chr4 (81-142)||(48807323-48807383)
chr4 (78-142)||(53536815-53536879)
chr4 (1-35)||(39773648-39773682)
chr4 (81-142)||(11565942-11566002)
chr4 (1-34)||(30723054-30723087)
chr4 (92-144)||(27872443-27872494)
chr4 (1-33)||(31425425-31425457)
chr4 (1-33)||(37562999-37563031)
chr4 (1-33)||(49169204-49169236)
chr4 (1-33)||(55799667-55799699)
[»] chr3 (29 HSPs)
chr3 (81-142)||(7941186-7941247)
chr3 (81-142)||(20485467-20485528)
chr3 (81-142)||(32593048-32593109)
chr3 (81-142)||(45076185-45076246)
chr3 (81-142)||(51755786-51755847)
chr3 (81-142)||(32743257-32743317)
chr3 (78-142)||(11270221-11270284)
chr3 (81-125)||(32592293-32592337)
chr3 (81-125)||(45075422-45075466)
chr3 (80-122)||(4274906-4274948)
chr3 (81-142)||(7941943-7942003)
chr3 (81-142)||(30294808-30294869)
chr3 (78-142)||(14043834-14043898)
chr3 (81-142)||(4274136-4274197)
chr3 (81-142)||(19842579-19842639)
chr3 (81-125)||(10658899-10658943)
chr3 (94-142)||(26493643-26493691)
chr3 (81-125)||(50330662-50330706)
chr3 (87-142)||(31890178-31890233)
chr3 (87-142)||(34722307-34722361)
chr3 (81-123)||(6143747-6143789)
chr3 (84-142)||(39999516-39999573)
chr3 (2-35)||(2743330-2743363)
chr3 (93-142)||(20484720-20484768)
chr3 (2-35)||(50957774-50957807)
chr3 (1-33)||(2858063-2858095)
chr3 (1-37)||(6745433-6745469)
chr3 (87-131)||(31889548-31889592)
chr3 (1-33)||(35743687-35743719)
[»] chr2 (22 HSPs)
chr2 (81-142)||(28139492-28139553)
chr2 (81-142)||(37294405-37294466)
chr2 (81-142)||(23266166-23266226)
chr2 (81-131)||(16544447-16544497)
chr2 (81-143)||(28419483-28419544)
chr2 (81-142)||(1728840-1728901)
chr2 (81-142)||(12252429-12252489)
chr2 (81-142)||(29407824-29407884)
chr2 (81-142)||(33222692-33222752)
chr2 (81-125)||(6232715-6232759)
chr2 (87-142)||(29407055-29407110)
chr2 (81-142)||(14002569-14002629)
chr2 (81-142)||(37322074-37322134)
chr2 (78-142)||(2271674-2271737)
chr2 (87-142)||(30271156-30271210)
chr2 (91-142)||(33661876-33661927)
chr2 (87-142)||(37893336-37893391)
chr2 (1-34)||(5355638-5355671)
chr2 (1-34)||(15835318-15835351)
chr2 (81-142)||(28138656-28138716)
chr2 (78-142)||(29601107-29601171)
chr2 (1-33)||(44100905-44100937)
[»] chr1 (18 HSPs)
chr1 (81-142)||(12627289-12627350)
chr1 (81-142)||(21268702-21268763)
chr1 (81-142)||(41909018-41909079)
chr1 (81-131)||(5329173-5329223)
chr1 (81-123)||(18609850-18609892)
chr1 (81-142)||(12628072-12628132)
chr1 (81-142)||(13760981-13761041)
chr1 (81-125)||(21699951-21699995)
chr1 (78-114)||(42290343-42290379)
chr1 (78-113)||(48455541-48455576)
chr1 (81-123)||(5329969-5330011)
chr1 (2-35)||(29356779-29356812)
chr1 (94-142)||(7943031-7943078)
chr1 (1-33)||(8548776-8548808)
chr1 (87-131)||(13760849-13760893)
chr1 (78-142)||(15695867-15695931)
chr1 (1-33)||(19914401-19914433)
chr1 (1-33)||(19928952-19928984)
[»] chr6 (9 HSPs)
chr6 (81-142)||(11157812-11157873)
chr6 (81-142)||(15546326-15546386)
chr6 (81-142)||(11159368-11159428)
chr6 (81-142)||(117832-117892)
chr6 (81-142)||(35096714-35096774)
chr6 (78-142)||(15888736-15888800)
chr6 (78-142)||(17338701-17338764)
chr6 (1-36)||(27641858-27641893)
chr6 (1-33)||(30825984-30826016)
[»] scaffold0283 (1 HSPs)
scaffold0283 (78-142)||(1575-1639)
[»] scaffold1379 (1 HSPs)
scaffold1379 (87-142)||(370-425)
[»] scaffold0092 (1 HSPs)
scaffold0092 (92-124)||(54652-54684)


Alignment Details
Target: chr8 (Bit Score: 50; Significance: 8e-20; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 13783105 - 13783044
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||    
T  13783105 aatttcaaacctgaaattaaataaggaaatacacctaaattttcccttaattaaatttaatt 13783044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 34892806 - 34892745
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||    
T  34892806 aatttcaaacctgaaattaaataaggaaatacacctaaattttcccttaattaaatttaatt 34892745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 83 - 142
Target Start/End: Original strand, 40740984 - 40741043
Alignment:
Q  83 tttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||    
T  40740984 tttcaaacctgaaattaaataaggaaatacacctaaattttcccttaattaaatttaatt 40741043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 16939456 - 16939517
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||| | ||||||||    
T  16939456 aatttcaaacctgaaattaaataaggaaatacaactaaattttcccttaattaaatttaatt 16939517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 37656803 - 37656742
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||| | ||||||||    
T  37656803 aatttcaaacatgaaattaaataaggaaatacacctaaattttcccttaattaaatttaatt 37656742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 7120976 - 7121037
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||||| ||||||||||||| ||||||| |||||||||||||||| | ||||||||    
T  7120976 aatttcaaacctaaaattaaataaggtaatacacctaaattttcccttaattaaatttaatt 7121037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 16940273 - 16940213
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||| | ||||||||    
T  16940273 aatttcaaacctgaaattaaataaggaaatacacctaaatttt-ccttaattaaatttaatt 16940213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 35205890 - 35205951
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||| | ||||||||||||||||||||| |||||||||||||||| | ||||||||    
T  35205890 aatttcaaacttaaaattaaataaggaaatacacctaaattttcccttaattaaatttaatt 35205951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 36345928 - 36345868
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||| | ||||||||    
T  36345928 aatttcaaacctgaaattaaataaggaaatacacctaaatttt-ccttaattaaatttaatt 36345868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 38134135 - 38134075
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||| | ||||||||    
T  38134135 aatttcaaacctgaaattaaataaggaaatacacataaatttt-ccttaattaaatttaatt 38134075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 41472033 - 41471972
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||||| ||||||||||||||||||||| |||||||| ||||||| | ||||||||    
T  41472033 aatttcaaaccttaaattaaataaggaaatacacctaaatttttccttaattaaatttaatt 41471972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 29034125 - 29034167
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaatttt 123  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  29034125 aatttcaaacctgaaattaaataaggaaatacacctaaatttt 29034167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 3086428 - 3086368
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||| ||||||||||||||||||||||| |||||||| ||||||| | ||||||||    
T  3086428 aatttcaaacttgaaattaaataaggaaatacacctaaatttt-ccttaattaaatttaatt 3086368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 7121783 - 7121723
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    ||||||||||||||| |||||||||||||||||| |||||||| ||||||| | ||||||||    
T  7121783 aatttcaaacctgaacttaaataaggaaatacacctaaatttt-ccttaattaaatttaatt 7121723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 13782311 - 13782371
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||||||||||||||||||||||||||  |||||||| ||||||| | ||||||||    
T  13782311 aatttcaaacctgaaattaaataaggaaatacaaataaatttt-ccttaattaaatttaatt 13782371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 22961501 - 22961441
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    ||||||||||||||||||| |||||||||||||| |||||||| ||||||| | ||||||||    
T  22961501 aatttcaaacctgaaattacataaggaaatacacctaaatttt-ccttaattaaatttaatt 22961441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 123
Target Start/End: Complemental strand, 35206660 - 35206615
Alignment:
Q  78 agaaatttcaaacctgaaattaaataaggaaatacacttaaatttt 123  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||    
T  35206660 agaaattttaaacctgaaattaaataaggaaatacacctaaatttt 35206615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 39207712 - 39207773
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    ||||| ||| |||||||||||||||||||||||| |||||||||||||| | | ||||||||    
T  39207712 aattttaaatctgaaattaaataaggaaatacacctaaattttcccttagttaaatttaatt 39207773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 20861903 - 20861839
Alignment:
Q  78 agaaatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    ||||||||||| ||||||||||||||||||||||||  ||| |||| ||||||| | ||||||||    
T  20861903 agaaatttcaagcctgaaattaaataaggaaatacatctaagtttttccttaattaaatttaatt 20861839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 124
Target Start/End: Complemental strand, 36595943 - 36595900
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttc 124  Q
    ||||||||||||||||||||||||| |||||||| |||||||||    
T  36595943 aatttcaaacctgaaattaaataagaaaatacacctaaattttc 36595900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 37655987 - 37656029
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaatttt 123  Q
    |||||||||| ||||||||||||||||||||||| ||||||||    
T  37655987 aatttcaaacttgaaattaaataaggaaatacacctaaatttt 37656029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 39513210 - 39513168
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaatttt 123  Q
    |||||||||||||||||||||||||||||||||| || |||||    
T  39513210 aatttcaaacctgaaattaaataaggaaatacacctatatttt 39513168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 3085591 - 3085651
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||| | ||||||||||||||||||||||| |||||||| ||||||| | ||||||||    
T  3085591 aatttcaaccttgaaattaaataaggaaatacacctaaatttt-ccttaattaaatttaatt 3085651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 123
Target Start/End: Original strand, 39512386 - 39512431
Alignment:
Q  78 agaaatttcaaacctgaaattaaataaggaaatacacttaaatttt 123  Q
    |||||||| |||||||||||||||||||||||||||  ||||||||    
T  39512386 agaaattttaaacctgaaattaaataaggaaatacatctaaatttt 39512431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 142
Target Start/End: Original strand, 44885762 - 44885826
Alignment:
Q  78 agaaatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    ||||||||||| |||||||||||||||| |||||||  ||| |||| ||||||| | ||||||||    
T  44885762 agaaatttcaagcctgaaattaaataagaaaatacatctaagtttttccttaattaaatttaatt 44885826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 184341 - 184309
Alignment:
Q  1 acagccaaacaacatgtgggaacatcaattctc 33  Q
    |||||||||||||||||||||||| ||||||||    
T  184341 acagccaaacaacatgtgggaacaacaattctc 184309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 2335254 - 2335286
Alignment:
Q  1 acagccaaacaacatgtgggaacatcaattctc 33  Q
    |||||||||||||||||||||||| ||||||||    
T  2335254 acagccaaacaacatgtgggaacaacaattctc 2335286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 22014212 - 22014180
Alignment:
Q  1 acagccaaacaacatgtgggaacatcaattctc 33  Q
    |||||||||||||||||||||||| ||||||||    
T  22014212 acagccaaacaacatgtgggaacagcaattctc 22014180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 142
Target Start/End: Original strand, 31745255 - 31745319
Alignment:
Q  78 agaaatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    ||||||||||| | ||||||||||||| ||||||||  ||| |||| ||||||| | ||||||||    
T  31745255 agaaatttcaagcttgaaattaaataaagaaatacatctaagtttttccttaattaaatttaatt 31745319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 36677678 - 36677646
Alignment:
Q  1 acagccaaacaacatgtgggaacatcaattctc 33  Q
    |||||||||||||||||||||||| ||||||||    
T  36677678 acagccaaacaacatgtgggaacaacaattctc 36677646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 142
Target Start/End: Original strand, 41471165 - 41471228
Alignment:
Q  78 agaaatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||| ||| || |||||||||||||||||| || |||||||| ||||||| | ||||||||    
T  41471165 agaaattttaaatctaaaattaaataaggaaatatacataaatttt-ccttaattaaatttaatt 41471228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 8e-20; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 30846001 - 30846062
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||    
T  30846001 aatttcaaacctgaaattaaataaggaaatacacataaattttcccttaattaaatttaatt 30846062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 80 - 140
Target Start/End: Complemental strand, 38555411 - 38555351
Alignment:
Q  80 aaatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaa 140  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||||| | ||||||    
T  38555411 aaatttcaaacctaaaattaaataaggaaatacacctaaattttcccttaattaaatttaa 38555351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 13644497 - 13644558
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||| ||| | ||||||||    
T  13644497 aatttcaaatctgaaattaaataaggaaatacacctaaattttccctgaattaaatttaatt 13644558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 14101498 - 14101559
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||| |||||||||||||| |||||||| |||||||||||||||| | ||||||||    
T  14101498 aatttcaaacgtgaaattaaataagaaaatacacctaaattttcccttaattaaatttaatt 14101559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 14411515 - 14411576
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||| |||||||||||||| |||||||| |||||||||||||||| | ||||||||    
T  14411515 aatttcaaacgtgaaattaaataagaaaatacacctaaattttcccttaattaaatttaatt 14411576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 48001372 - 48001312
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||| | ||||||||    
T  48001372 aatttcaaacctgaaattaaataaagaaatacacttaaatttt-ccttaattaaatttaatt 48001312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 47751182 - 47751138
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcc 125  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  47751182 aatttcaaacctgaaattaaataaggaaatacacctaaattttcc 47751138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 38555140 - 38555182
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaatttt 123  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  38555140 aatttcaaacctgaaattaaataaggaaatacacctaaatttt 38555182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 11886034 - 11886094
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    ||||||||||||||||||||||||| |||||||| |||||||| ||||||| | ||||||||    
T  11886034 aatttcaaacctgaaattaaataagaaaatacacctaaatttt-ccttaattaaatttaatt 11886094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 14102345 - 14102285
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||| ||||||||||||||||||||||| |||||||| ||||||| | ||||||||    
T  14102345 aatttcaaacatgaaattaaataaggaaatacacctaaatttt-ccttaattaaatttaatt 14102285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 14412362 - 14412302
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||| ||||||||||||||||||||||| |||||||| ||||||| | ||||||||    
T  14412362 aatttcaaacttgaaattaaataaggaaatacacctaaatttt-ccttaattaaatttaatt 14412302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 31513036 - 31512976
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||| ||||||||||||||||||||||| |||||||| ||||||| | ||||||||    
T  31513036 aatttcaaacttgaaattaaataaggaaatacacctaaatttt-ccttaattaaatttaatt 31512976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 142
Target Start/End: Complemental strand, 30846817 - 30846763
Alignment:
Q  87 aaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||||||||||||||||||||| |||||||| ||||||| | ||||||||    
T  30846817 aaacctgaaattaaataaggaaatacacctaaatttt-ccttaattaaatttaatt 30846763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 13645339 - 13645279
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    ||||| ||| |||||||||||||||||||||||| |||||||| ||||||| | ||||||||    
T  13645339 aattttaaatctgaaattaaataaggaaatacacctaaatttt-ccttaattaaatttaatt 13645279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 603745 - 603711
Alignment:
Q  1 acagccaaacaacatgtgggaacatcaattctctt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  603745 acagccaaacaacatgtgggaacagcaattctctt 603711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 10097882 - 10097848
Alignment:
Q  1 acagccaaacaacatgtgggaacatcaattctctt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  10097882 acagccaaacaacatgtgggaacaacaattctctt 10097848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 16636349 - 16636383
Alignment:
Q  1 acagccaaacaacatgtgggaacatcaattctctt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  16636349 acagccaaacaacatgtgggaacaacaattctctt 16636383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 17459289 - 17459255
Alignment:
Q  1 acagccaaacaacatgtgggaacatcaattctctt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  17459289 acagccaaacaacatgtgggaacaacaattctctt 17459255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 17593925 - 17593959
Alignment:
Q  1 acagccaaacaacatgtgggaacatcaattctctt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  17593925 acagccaaacaacatgtgggaacaacaattctctt 17593959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 7036 - 7004
Alignment:
Q  1 acagccaaacaacatgtgggaacatcaattctc 33  Q
    |||||||||||||||||||||||| ||||||||    
T  7036 acagccaaacaacatgtgggaacagcaattctc 7004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 8153 - 8185
Alignment:
Q  1 acagccaaacaacatgtgggaacatcaattctc 33  Q
    |||||||||||||||||||||||| ||||||||    
T  8153 acagccaaacaacatgtgggaacagcaattctc 8185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 8e-20; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 40789204 - 40789143
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||    
T  40789204 aatttcaaacctgaaattaaataaggaaatacacctaaattttcccttaattaaatttaatt 40789143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 35672028 - 35671967
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||| | ||||||||    
T  35672028 aatttcaaagctgaaattaaataaggaaatacacctaaattttcccttaattaaatttaatt 35671967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 35282394 - 35282331
Alignment:
Q  78 agaaatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||| | ||||||||    
T  35282394 agaaatttcaaacctgaaattaaataaggaaatacacctaaatttt-ccttaattaaatttaatt 35282331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 2169763 - 2169813
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaat 131  Q
    |||||||||||| |||||||||||| |||||||| ||||||||||||||||    
T  2169763 aatttcaaacctaaaattaaataagaaaatacacctaaattttcccttaat 2169813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 41622223 - 41622265
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaatttt 123  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  41622223 aatttcaaacctgaaattaaataaggaaatacacctaaatttt 41622265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 41623045 - 41622984
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    ||||||||||||||||||||||||| |||||||  |||| ||||||||||| | ||||||||    
T  41623045 aatttcaaacctgaaattaaataagaaaatacatctaaaatttcccttaattaaatttaatt 41622984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 42912875 - 42912831
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcc 125  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||    
T  42912875 aatttcaaacctgaaactaaataaggaaatacacctaaattttcc 42912831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 142
Target Start/End: Original strand, 30966171 - 30966226
Alignment:
Q  87 aaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||||||||||||||||||||| ||| |||| ||||||| | ||||||||    
T  30966171 aaacctgaaattaaataaggaaatacacctaagtttttccttaattaaatttaatt 30966226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 20744016 - 20743956
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||| ||||||||||||||||||| ||| |||||||| ||||||| | ||||||||    
T  20744016 aatttcaaacatgaaattaaataaggaaatgcacataaatttt-ccttaattaaatttaatt 20743956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 35671158 - 35671218
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||| |||| |||||||||||||||||| |||||||| ||||||| | ||||||||    
T  35671158 aatttcaaacatgaacttaaataaggaaatacacctaaatttt-ccttaattaaatttaatt 35671218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 87 - 142
Target Start/End: Original strand, 13580638 - 13580693
Alignment:
Q  87 aaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||||||||||| ||||||||| ||| |||| ||||||| | ||||||||    
T  13580638 aaacctgaaattaaataaagaaatacacgtaagtttttccttaattaaatttaatt 13580693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 81 - 124
Target Start/End: Original strand, 30192568 - 30192611
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttc 124  Q
    ||||||||||||||||||||||||||||||| ||  ||||||||    
T  30192568 aatttcaaacctgaaattaaataaggaaatataccaaaattttc 30192611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 142
Target Start/End: Complemental strand, 13581652 - 13581596
Alignment:
Q  86 caaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||||||||||||| ||| |||| ||| ||||||| |||| | ||||||||    
T  13581652 caaacctgaaattaaataagaaaacacacctaagttttcccctaattaaatttaatt 13581596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 142
Target Start/End: Original strand, 13589665 - 13589721
Alignment:
Q  86 caaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||||||||||||| ||| |||| ||| ||||||| |||| | ||||||||    
T  13589665 caaacctgaaattaaataagaaaacacacctaagttttcccctaattaaatttaatt 13589721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 37814548 - 37814516
Alignment:
Q  1 acagccaaacaacatgtgggaacatcaattctc 33  Q
    |||||||||||||||||||||||| ||||||||    
T  37814548 acagccaaacaacatgtgggaacagcaattctc 37814516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 8e-20; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 2449026 - 2449087
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||    
T  2449026 aatttcaaacctgaaattaaataaggaaatacacctaaattttcccttaattaaatttaatt 2449087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 43176625 - 43176564
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||    
T  43176625 aatttcaaacctgaaattaaataaggaaatacacctaaattttcccttaattaaatttaatt 43176564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 37856744 - 37856680
Alignment:
Q  78 agaaatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||||||||| | ||||||||    
T  37856744 agaaatttcaaacctgaaattaaataaggaaatacacctaaattctcccttaattaaatttaatt 37856680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 2449612 - 2449549
Alignment:
Q  78 agaaatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||| | ||||||||    
T  2449612 agaaatttcaaacctgaaattaaataaggaaatacacctaaatttt-ccttaattaaatttaatt 2449549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 37296208 - 37296148
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||| | ||||||||    
T  37296208 aatttcaaacctgaaattaaataaggaaatacacctaaatttt-ccttaattaaatttaatt 37296148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 48806561 - 48806622
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    ||||||||||||||||||||||||| |||||||| |||||||| ||||||| | ||||||||    
T  48806561 aatttcaaacctgaaattaaataagaaaatacacctaaatttttccttaattaaatttaatt 48806622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 6092752 - 6092691
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    ||||| |||| ||||||||||||||||||||||  |||||||||||||||| | ||||||||    
T  6092752 aattttaaacttgaaattaaataaggaaatacatctaaattttcccttaattaaatttaatt 6092691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 18884501 - 18884441
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||||| ||||||||||||||||||||| |||||||| ||||||| | ||||||||    
T  18884501 aatttcaaacctaaaattaaataaggaaatacacctaaatttt-ccttaattaaatttaatt 18884441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 37855909 - 37855969
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||||||||||||||||||||||||||| |||| ||| ||||||| | ||||||||    
T  37855909 aatttcaaacctgaaattaaataaggaaatacacctaaacttt-ccttaattaaatttaatt 37855969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 43175783 - 43175843
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    ||||||||||||||||||||||||| |||||||| |||||||| ||||||| | ||||||||    
T  43175783 aatttcaaacctgaaattaaataagaaaatacacctaaatttt-ccttaattaaatttaatt 43175843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 48807383 - 48807323
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||||| ||||||||||||||||||||| |||||||| ||||||| | ||||||||    
T  48807383 aatttcaaaccttaaattaaataaggaaatacacctaaatttt-ccttaattaaatttaatt 48807323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 53536879 - 53536815
Alignment:
Q  78 agaaatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||| || ||||||||||||||||||||||||  ||| ||||||||| || | ||||||||    
T  53536879 agaaattttaagcctgaaattaaataaggaaatacatctaagttttcccttgattaaatttaatt 53536815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 39773648 - 39773682
Alignment:
Q  1 acagccaaacaacatgtgggaacatcaattctctt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  39773648 acagccaaacaacatgtgggaacagcaattctctt 39773682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 11565942 - 11566002
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    ||||| ||||||||||||||||||| |||||| | |||||||| ||||||| | ||||||||    
T  11565942 aattttaaacctgaaattaaataagaaaatacgcctaaatttt-ccttaattaaatttaatt 11566002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 30723087 - 30723054
Alignment:
Q  1 acagccaaacaacatgtgggaacatcaattctct 34  Q
    |||||||||||||||||||||||| |||||||||    
T  30723087 acagccaaacaacatgtgggaacagcaattctct 30723054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 27872443 - 27872494
Alignment:
Q  92 tgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatttt 144  Q
    ||||||||||||| ||||||||| |||||||| ||||||| | ||||||||||    
T  27872443 tgaaattaaataaagaaatacacctaaatttt-ccttaattaaatttaatttt 27872494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 31425425 - 31425457
Alignment:
Q  1 acagccaaacaacatgtgggaacatcaattctc 33  Q
    |||||||||||||||||||||||| ||||||||    
T  31425425 acagccaaacaacatgtgggaacaacaattctc 31425457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 37563031 - 37562999
Alignment:
Q  1 acagccaaacaacatgtgggaacatcaattctc 33  Q
    |||||||||||||||||||||||| ||||||||    
T  37563031 acagccaaacaacatgtgggaacagcaattctc 37562999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 49169204 - 49169236
Alignment:
Q  1 acagccaaacaacatgtgggaacatcaattctc 33  Q
    |||||||||||||||||||||||| ||||||||    
T  49169204 acagccaaacaacatgtgggaacagcaattctc 49169236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 55799667 - 55799699
Alignment:
Q  1 acagccaaacaacatgtgggaacatcaattctc 33  Q
    |||||||||||||||||||||||| ||||||||    
T  55799667 acagccaaacaacatgtgggaacaacaattctc 55799699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 8e-20; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 7941186 - 7941247
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||    
T  7941186 aatttcaaacctgaaattaaataaggaaatacacctaaattttcccttaattaaatttaatt 7941247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 20485528 - 20485467
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||    
T  20485528 aatttcaaacctgaaattaaataaggaaatacacctaaattttcccttaattaaatttaatt 20485467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 32593109 - 32593048
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||    
T  32593109 aatttcaaacctgaaattaaataaggaaatacacctaaattttcccttaattaaatttaatt 32593048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 45076246 - 45076185
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||    
T  45076246 aatttcaaacctgaaattaaataaggaaatacacctaaattttcccttaattaaatttaatt 45076185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 51755847 - 51755786
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| |||| | ||||||||    
T  51755847 aatttcaaacctgaaattaaataaggaaatacacctaaattttcccataattaaatttaatt 51755786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 32743257 - 32743317
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||| | ||||||||    
T  32743257 aatttcaaacctgaaattaaataaggaaatacacctaaatttt-ccttaattaaatttaatt 32743317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 11270284 - 11270221
Alignment:
Q  78 agaaatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||| ||||||| | ||||||||    
T  11270284 agaaatttcaaacctaaaattaaataaggaaatacacctaaatttt-ccttaattaaatttaatt 11270221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 32592293 - 32592337
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcc 125  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  32592293 aatttcaaacctgaaattaaataaggaaatacacctaaattttcc 32592337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 45075422 - 45075466
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcc 125  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  45075422 aatttcaaacctgaaattaaataaggaaatacacctaaattttcc 45075466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 80 - 122
Target Start/End: Complemental strand, 4274948 - 4274906
Alignment:
Q  80 aaatttcaaacctgaaattaaataaggaaatacacttaaattt 122  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  4274948 aaatttcaaacctgaaattaaataaggaaatacacctaaattt 4274906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 7942003 - 7941943
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    ||||||||||||||||||||||||| |||||||| |||||||| ||||||| | ||||||||    
T  7942003 aatttcaaacctgaaattaaataagaaaatacacctaaatttt-ccttaattaaatttaatt 7941943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 30294869 - 30294808
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||||||||||||||||||||||| ||| |||||||| | ||||| | ||||||||    
T  30294869 aatttcaaacctgaaattaaataaggaaatgcacctaaatttttctttaattaaatttaatt 30294808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 14043898 - 14043834
Alignment:
Q  78 agaaatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    ||||||||||| ||||||||||||||||||||||||  ||| |||| ||||||| | ||||||||    
T  14043898 agaaatttcaagcctgaaattaaataaggaaatacatctaagtttttccttaattaaatttaatt 14043834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 4274136 - 4274197
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||| ||||||||||||| |||||||||  ||||||||| ||||| | ||||||||    
T  4274136 aatttcaaacttgaaattaaataaagaaatacacccaaattttccattaattaaatttaatt 4274197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 19842579 - 19842639
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||| ||||||||||||||||||| ||| |||||||| ||||||| | ||||||||    
T  19842579 aatttcaaacatgaaattaaataaggaaatgcacataaatttt-ccttaattaaatttaatt 19842639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 10658899 - 10658943
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcc 125  Q
    ||||||||| |||||||||||||||||||||||| ||| ||||||    
T  10658899 aatttcaaatctgaaattaaataaggaaatacacctaagttttcc 10658943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 142
Target Start/End: Original strand, 26493643 - 26493691
Alignment:
Q  94 aaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    ||||||||||||||||||||| |||||||||| ||||| | ||||||||    
T  26493643 aaattaaataaggaaatacacctaaattttcctttaattaaatttaatt 26493691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 50330662 - 50330706
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcc 125  Q
    |||||||||| ||||||||||||||||||| ||| ||||||||||    
T  50330662 aatttcaaacatgaaattaaataaggaaatgcacataaattttcc 50330706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 87 - 142
Target Start/End: Complemental strand, 31890233 - 31890178
Alignment:
Q  87 aaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||||||||||||||| ||||| ||| |||| ||||||| | ||||||||    
T  31890233 aaacctgaaattaaataaggaagtacacctaagtttttccttaattaaatttaatt 31890178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 87 - 142
Target Start/End: Original strand, 34722307 - 34722361
Alignment:
Q  87 aaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||||||||||||||||||||| ||| |||| ||||||| | ||||||||    
T  34722307 aaacctgaaattaaataaggaaatacac-taagtttttccttaattaaatttaatt 34722361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 6143747 - 6143789
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaatttt 123  Q
    ||||| |||||||||||||||||||||| ||||| ||||||||    
T  6143747 aattttaaacctgaaattaaataaggaactacacctaaatttt 6143789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 142
Target Start/End: Complemental strand, 39999573 - 39999516
Alignment:
Q  84 ttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    ||||||||| |||||||||||| |||||||| |||||||| ||||||| | ||||||||    
T  39999573 ttcaaaccttaaattaaataagaaaatacacctaaatttt-ccttaattaaatttaatt 39999516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 2743363 - 2743330
Alignment:
Q  2 cagccaaacaacatgtgggaacatcaattctctt 35  Q
    ||||||||||||||||||||||| ||||||||||    
T  2743363 cagccaaacaacatgtgggaacaacaattctctt 2743330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 93 - 142
Target Start/End: Original strand, 20484720 - 20484768
Alignment:
Q  93 gaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||||||||||||||| |||||||| ||||||| | ||||||||    
T  20484720 gaaattaaataaggaaatacacctaaatttt-ccttaattaaatttaatt 20484768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 50957774 - 50957807
Alignment:
Q  2 cagccaaacaacatgtgggaacatcaattctctt 35  Q
    ||||||||||||||||||||||| ||||||||||    
T  50957774 cagccaaacaacatgtgggaacagcaattctctt 50957807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 2858063 - 2858095
Alignment:
Q  1 acagccaaacaacatgtgggaacatcaattctc 33  Q
    |||||||||||||||||||||||| ||||||||    
T  2858063 acagccaaacaacatgtgggaacaacaattctc 2858095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 6745433 - 6745469
Alignment:
Q  1 acagccaaacaacatgtgggaacatcaattctcttaa 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  6745433 acagccaaacaacatgtgggaacagcaatactcttaa 6745469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 131
Target Start/End: Original strand, 31889548 - 31889592
Alignment:
Q  87 aaacctgaaattaaataaggaaatacacttaaattttcccttaat 131  Q
    ||||||||||||| |||||||||||||| ||| |||| |||||||    
T  31889548 aaacctgaaattagataaggaaatacacctaagtttttccttaat 31889592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 35743687 - 35743719
Alignment:
Q  1 acagccaaacaacatgtgggaacatcaattctc 33  Q
    |||||||||||||||||||||||| ||||||||    
T  35743687 acagccaaacaacatgtgggaacagcaattctc 35743719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 8e-20; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 28139553 - 28139492
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||    
T  28139553 aatttcaaacctgaaattaaataaggaaatacacctaaattttcccttaattaaatttaatt 28139492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 37294405 - 37294466
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||    
T  37294405 aatttcaaacctgaaattaaataaggaaatacacctaaattttcccttaattaaatttaatt 37294466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 23266226 - 23266166
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||    
T  23266226 aatttcaaacctgaaattaaataaggaaatacacttaaatttt-ccttaattaaatttaatt 23266166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 16544447 - 16544497
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaat 131  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  16544447 aatttcaaacatgaaattaaataaggaaatacacctaaattttcccttaat 16544497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 81 - 143
Target Start/End: Original strand, 28419483 - 28419544
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaattt 143  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||| | |||||||||    
T  28419483 aatttcaaacctgaaattaaataaggaaatacacctaaatttt-ccttaattaaatttaattt 28419544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 1728840 - 1728901
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||||||||||||||||||||||||||| |||||||| | ||||| | ||||||||    
T  1728840 aatttcaaacctgaaattaaataaggaaatacacctaaatttttctttaattaaatttaatt 1728901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 12252489 - 12252429
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||| | ||||||||    
T  12252489 aatttcaaacctgaaattaaataaggaaatacacctaaatttt-ccttaattaaatttaatt 12252429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 29407884 - 29407824
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||| | ||||||||    
T  29407884 aatttcaaacctgaaattaaataaggaaatacacctaaatttt-ccttaattaaatttaatt 29407824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 33222692 - 33222752
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||| | ||||||||    
T  33222692 aatttcaaacctgaaattaaataaggaaatacacctaaatttt-ccttaattaaatttaatt 33222752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 6232715 - 6232759
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcc 125  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  6232715 aatttcaaacctgaaattaaataaggaaatacacctaaattttcc 6232759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 87 - 142
Target Start/End: Original strand, 29407055 - 29407110
Alignment:
Q  87 aaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    ||||||||||||||||||| |||||||| |||||||||||||||| | ||||||||    
T  29407055 aaacctgaaattaaataagtaaatacacctaaattttcccttaattaaatttaatt 29407110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 14002569 - 14002629
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    ||||||||||| |||||||||||||||||||||| |||||||| ||||||| | ||||||||    
T  14002569 aatttcaaaccagaaattaaataaggaaatacacctaaatttt-ccttaattaaatttaatt 14002629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 37322134 - 37322074
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    ||||||||| |||||||||||||||||||||||| |||||||| ||||||| | ||||||||    
T  37322134 aatttcaaatctgaaattaaataaggaaatacacctaaatttt-ccttaattaaatttaatt 37322074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 2271737 - 2271674
Alignment:
Q  78 agaaatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    ||||||||||||| ||||||||||||||||||| ||| |||||||| ||||||| | ||||||||    
T  2271737 agaaatttcaaacatgaaattaaataaggaaatgcacataaatttt-ccttaattaaatttaatt 2271674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 87 - 142
Target Start/End: Original strand, 30271156 - 30271210
Alignment:
Q  87 aaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||||||||||||||||||||| ||| |||| ||||||| | ||||||||    
T  30271156 aaacctgaaattaaataaggaaatacac-taagtttttccttaattaaatttaatt 30271210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 91 - 142
Target Start/End: Original strand, 33661876 - 33661927
Alignment:
Q  91 ctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||||||||||||||||| ||| |||| ||||||| | ||||||||    
T  33661876 ctgaaattaaataaggaaatacacctaagtttttccttaattaaatttaatt 33661927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 87 - 142
Target Start/End: Complemental strand, 37893391 - 37893336
Alignment:
Q  87 aaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||| ||||||||||||||||||||||| ||| |||| ||||||| | ||||||||    
T  37893391 aaacatgaaattaaataaggaaatacacctaagtttttccttaattaaatttaatt 37893336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 5355638 - 5355671
Alignment:
Q  1 acagccaaacaacatgtgggaacatcaattctct 34  Q
    |||||||||||||||||||||||| |||||||||    
T  5355638 acagccaaacaacatgtgggaacagcaattctct 5355671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 15835318 - 15835351
Alignment:
Q  1 acagccaaacaacatgtgggaacatcaattctct 34  Q
    |||||||||||||||||||||||| |||||||||    
T  15835318 acagccaaacaacatgtgggaacaacaattctct 15835351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 28138656 - 28138716
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    ||||||||| || |||||||||||| |||||||| |||||||| ||||||| | ||||||||    
T  28138656 aatttcaaatctaaaattaaataagaaaatacacctaaatttt-ccttaattaaatttaatt 28138716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 29601171 - 29601107
Alignment:
Q  78 agaaatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    ||||||||||| |||| |||||||||| ||||||||  ||| |||| ||||||| | ||||||||    
T  29601171 agaaatttcaagcctggaattaaataaagaaatacatctaagtttttccttaattaaatttaatt 29601107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 44100905 - 44100937
Alignment:
Q  1 acagccaaacaacatgtgggaacatcaattctc 33  Q
    |||||||||||||||||||||||| ||||||||    
T  44100905 acagccaaacaacatgtgggaacaacaattctc 44100937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 8e-20; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 12627289 - 12627350
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||    
T  12627289 aatttcaaacctgaaattaaataaggaaatacacctaaattttcccttaattaaatttaatt 12627350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 21268763 - 21268702
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||| | ||||||||    
T  21268763 aatttcaaacctgaaattaaataaggaaatacacctaaattttcctttaattaaatttaatt 21268702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 41909018 - 41909079
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||||| | ||||||||    
T  41909018 aattttaaacctgaaattaaataaggaaatacacctaaattttcccttaattaaatttaatt 41909079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 5329173 - 5329223
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaat 131  Q
    |||||| || |||||||||||||||||||||||| ||||||||||||||||    
T  5329173 aatttcgaatctgaaattaaataaggaaatacacctaaattttcccttaat 5329223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 18609892 - 18609850
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaatttt 123  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  18609892 aatttcaaacctgaaattaaataaggaaatacacctaaatttt 18609850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 12628132 - 12628072
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||||||||||||||||||||||||||| |||| ||| ||||||| | ||||||||    
T  12628132 aatttcaaacctgaaattaaataaggaaatacacctaaaattt-ccttaattaaatttaatt 12628072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 13761041 - 13760981
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||||| ||||||||||||||||||||| |||||||| ||||||| | ||||||||    
T  13761041 aatttcaaaccttaaattaaataaggaaatacacctaaatttt-ccttaattaaatttaatt 13760981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 21699951 - 21699995
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcc 125  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||    
T  21699951 aatttcaaacctgaaattaaataagaaaatacacctaaattttcc 21699995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 78 - 114
Target Start/End: Original strand, 42290343 - 42290379
Alignment:
Q  78 agaaatttcaaacctgaaattaaataaggaaatacac 114  Q
    |||||||||||||||||||||||||||||||||||||    
T  42290343 agaaatttcaaacctgaaattaaataaggaaatacac 42290379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 113
Target Start/End: Original strand, 48455541 - 48455576
Alignment:
Q  78 agaaatttcaaacctgaaattaaataaggaaataca 113  Q
    ||||||||||||||||||||||||||||||||||||    
T  48455541 agaaatttcaaacctgaaattaaataaggaaataca 48455576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 5330011 - 5329969
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaatttt 123  Q
    |||||||||||| ||||||||||||||||||||| ||||||||    
T  5330011 aatttcaaacctaaaattaaataaggaaatacacctaaatttt 5329969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 29356779 - 29356812
Alignment:
Q  2 cagccaaacaacatgtgggaacatcaattctctt 35  Q
    ||||||||||||||||||||||| ||||||||||    
T  29356779 cagccaaacaacatgtgggaacaacaattctctt 29356812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 142
Target Start/End: Original strand, 7943031 - 7943078
Alignment:
Q  94 aaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    ||||||||||||||||||||| |||||||| ||||||| | ||||||||    
T  7943031 aaattaaataaggaaatacacctaaatttt-ccttaattaaatttaatt 7943078  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 8548776 - 8548808
Alignment:
Q  1 acagccaaacaacatgtgggaacatcaattctc 33  Q
    |||||||||||||||||||||||| ||||||||    
T  8548776 acagccaaacaacatgtgggaacagcaattctc 8548808  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 131
Target Start/End: Original strand, 13760849 - 13760893
Alignment:
Q  87 aaacctgaaattaaataaggaaatacacttaaattttcccttaat 131  Q
    |||||| |||||||||||| |||||||| |||||||| |||||||    
T  13760849 aaacctaaaattaaataagaaaatacacataaatttttccttaat 13760893  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 142
Target Start/End: Original strand, 15695867 - 15695931
Alignment:
Q  78 agaaatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    ||||||||| |  |||||||||||||||||||||||  ||| |||| ||||||| | ||||||||    
T  15695867 agaaatttcgagtctgaaattaaataaggaaatacatctaagtttttccttaattaaatttaatt 15695931  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 19914433 - 19914401
Alignment:
Q  1 acagccaaacaacatgtgggaacatcaattctc 33  Q
    |||||||||||||||||||||||| ||||||||    
T  19914433 acagccaaacaacatgtgggaacaacaattctc 19914401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 19928952 - 19928984
Alignment:
Q  1 acagccaaacaacatgtgggaacatcaattctc 33  Q
    |||||||||||||||||||||||| ||||||||    
T  19928952 acagccaaacaacatgtgggaacagcaattctc 19928984  T

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Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 11157812 - 11157873
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||| | ||||||||    
T  11157812 aatttcaaacctgaaattaaataaggaaatgcacctaaattttcccttaattaaatttaatt 11157873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 15546386 - 15546326
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||| | ||||||||    
T  15546386 aatttcaaacctgaaattaaataaggaaatacacctaaatttt-ccttaattaaatttaatt 15546326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 11159428 - 11159368
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    ||||| |||||||||||||||||||||||||||| |||||||| ||||||| | ||||||||    
T  11159428 aattttaaacctgaaattaaataaggaaatacacctaaatttt-ccttaattaaatttaatt 11159368  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 117892 - 117832
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    ||||||||| ||||||||||||||||| |||||| |||||||| ||||||| | ||||||||    
T  117892 aatttcaaaactgaaattaaataaggagatacacctaaatttt-ccttaattaaatttaatt 117832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 35096714 - 35096774
Alignment:
Q  81 aatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||||||| |||||||||||| |||||||| |||||||| ||||||| | ||||||||    
T  35096714 aatttcaaacctaaaattaaataagaaaatacacctaaatttt-ccttaattaaatttaatt 35096774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 15888800 - 15888736
Alignment:
Q  78 agaaatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||| || ||||||||||||||||||||||||  ||| |||| ||||||| | ||||||||    
T  15888800 agaaatttgaagcctgaaattaaataaggaaatacatctaagtttttccttaattaaatttaatt 15888736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 17338764 - 17338701
Alignment:
Q  78 agaaatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    |||||||| ||| ||||||||||||||| |||||||| |||||||| ||||||| | ||||||||    
T  17338764 agaaattttaaatctgaaattaaataagaaaatacacctaaatttt-ccttaattaaatttaatt 17338701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 27641858 - 27641893
Alignment:
Q  1 acagccaaacaacatgtgggaacatcaattctctta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  27641858 acagccaaacaacatgtgggaacagcaattctctta 27641893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 30826016 - 30825984
Alignment:
Q  1 acagccaaacaacatgtgggaacatcaattctc 33  Q
    |||||||||||||||||||||||| ||||||||    
T  30826016 acagccaaacaacatgtgggaacagcaattctc 30825984  T

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Target: scaffold0283 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 1639 - 1575
Alignment:
Q  78 agaaatttcaaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    ||||||||||| |||||||||||||||| |||||||  ||| |||| ||||||| | ||||||||    
T  1639 agaaatttcaagcctgaaattaaataagaaaatacatctaagtttttccttaattaaatttaatt 1575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1379 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold1379
Description:

Target: scaffold1379; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 87 - 142
Target Start/End: Complemental strand, 425 - 370
Alignment:
Q  87 aaacctgaaattaaataaggaaatacacttaaattttcccttaatcagatttaatt 142  Q
    ||||||||||||||||||||||||||||| |  |||| ||||||| | ||||||||    
T  425 aaacctgaaattaaataaggaaatacactaagttttttccttaattaaatttaatt 370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 124
Target Start/End: Original strand, 54652 - 54684
Alignment:
Q  92 tgaaattaaataaggaaatacacttaaattttc 124  Q
    ||||||||||||||||||||||| |||||||||    
T  54652 tgaaattaaataaggaaatacacctaaattttc 54684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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