View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18996_high_5 (Length: 524)

Name: NF18996_high_5
Description: NF18996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18996_high_5
NF18996_high_5
[»] chr8 (9 HSPs)
chr8 (89-513)||(32429228-32429652)
chr8 (18-93)||(32428644-32428719)
chr8 (395-507)||(6813349-6813462)
chr8 (389-477)||(23799911-23799999)
chr8 (148-238)||(5591550-5591640)
chr8 (148-194)||(35744799-35744845)
chr8 (148-185)||(6813102-6813139)
chr8 (148-220)||(4732341-4732413)
chr8 (269-329)||(23800058-23800118)
[»] chr7 (11 HSPs)
chr7 (389-477)||(9185506-9185594)
chr7 (389-477)||(49091327-49091415)
chr7 (389-477)||(12405987-12406075)
chr7 (389-477)||(18413308-18413396)
chr7 (148-207)||(22811276-22811335)
chr7 (148-194)||(21988329-21988375)
chr7 (148-185)||(5817826-5817863)
chr7 (148-201)||(22870659-22870712)
chr7 (269-329)||(18413188-18413248)
chr7 (269-329)||(21645555-21645615)
chr7 (389-477)||(21645675-21645763)
[»] chr6 (6 HSPs)
chr6 (389-477)||(18232510-18232598)
chr6 (148-219)||(16553360-16553431)
chr6 (148-219)||(16629916-16629987)
chr6 (148-219)||(16651620-16651691)
chr6 (389-505)||(9035947-9036064)
chr6 (149-189)||(26309909-26309949)
[»] chr4 (7 HSPs)
chr4 (389-477)||(9224753-9224841)
chr4 (389-477)||(16624354-16624442)
chr4 (148-219)||(7123392-7123463)
chr4 (148-219)||(8394102-8394173)
chr4 (139-185)||(31480946-31480992)
chr4 (149-238)||(52094776-52094865)
chr4 (148-188)||(5350578-5350618)
[»] chr3 (4 HSPs)
chr3 (393-477)||(3323896-3323980)
chr3 (148-238)||(22834421-22834511)
chr3 (148-189)||(5898170-5898211)
chr3 (148-220)||(10209884-10209956)
[»] chr2 (7 HSPs)
chr2 (389-477)||(16388113-16388201)
chr2 (389-477)||(10445789-10445877)
chr2 (389-477)||(19348927-19349015)
chr2 (389-477)||(25403300-25403388)
chr2 (148-194)||(19348686-19348732)
chr2 (148-177)||(21520150-21520179)
chr2 (389-477)||(23078816-23078904)
[»] chr5 (10 HSPs)
chr5 (148-219)||(35287779-35287850)
chr5 (389-477)||(27449472-27449560)
chr5 (389-477)||(43598386-43598474)
chr5 (389-477)||(43603878-43603966)
chr5 (389-477)||(43609370-43609458)
chr5 (390-504)||(534157-534272)
chr5 (148-219)||(40380800-40380871)
chr5 (148-194)||(33790724-33790770)
chr5 (139-193)||(34842016-34842070)
chr5 (389-477)||(31397341-31397429)
[»] scaffold0842 (1 HSPs)
scaffold0842 (389-477)||(3541-3629)
[»] chr1 (2 HSPs)
chr1 (389-477)||(41397889-41397977)
chr1 (389-477)||(19359187-19359275)
[»] scaffold0016 (1 HSPs)
scaffold0016 (149-220)||(115286-115357)
[»] scaffold0188 (2 HSPs)
scaffold0188 (389-477)||(18293-18381)
scaffold0188 (269-329)||(18441-18501)
[»] scaffold0006 (1 HSPs)
scaffold0006 (389-477)||(2157-2245)


Alignment Details
Target: chr8 (Bit Score: 405; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 89 - 513
Target Start/End: Original strand, 32429228 - 32429652
Alignment:
Q  89 ttctccaagtcatcaactagcctgtgaatgtatgttaattgatccacaagaggtttaagctccaccatcctaaatgagtagagttgttgtttcaagaatt 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32429228 ttctccaagtcatcaactagcctgtgaatgtatgttaattgatccacaagaggtttaagctccaccatcctaaatgagtagagttgttgtttcaagaatt 32429327  T
Q  189 gtctataagtcaatgacttgaacatatacaataactcgaatttggaccaccttgacgtcataattgtttcctctttgacttcccttataaccttatctcc 288  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  32429328 gtctataagtcaatgacttgaacatatacaataactccaatttggaccaccttgacgtcataattgtttcctctctgacttcccttataaccttatctcc 32429427  T
Q  289 gagacatagaaaaataacactttttgtctagtctatcatctttatctttgtagctcgtctcaagtttgctaacatcacaacttcaccaacccattcttta 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32429428 gagacatagaaaaataacactttttgtctagtctatcatctttatctttgtagctcgtctcaagtttgctaacatcacaacttcaccaacccattcttta 32429527  T
Q  389 acacacttttgttttgtcaaaacatcttgcgtctttatcttccacaacccaaaattattgcttctagtaaacttcttaatgtcccacttcaacccatgat 488  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  32429528 acacacttttgttttgtcaaaacctcttgcgtctttatcttccacaacccaaaattattgcttctagtaaacttctcaatgtcccatttcaacccatgat 32429627  T
Q  489 gctcacttgaccaatttaccccttt 513  Q
    |||||||||||||||||||||||||    
T  32429628 gctcacttgaccaatttaccccttt 32429652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 32428644 - 32428719
Alignment:
Q  18 aattcaaactcaagttcaccaataaacttagatattgaggacaaatatcaaagacaaccaataatcaaacattctc 93  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32428644 aattcaaactcaagttcaccaataaacttagatattgaggacaaatatcaaagacaaccaataatcaaacattctc 32428719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 395 - 507
Target Start/End: Original strand, 6813349 - 6813462
Alignment:
Q  395 ttttgttttgtcaaaacatcttgcgtctttatcttccacaacccaaaattattgcttctagtaaacttcttaatgtcccac-ttcaacccatgatgctca 493  Q
    ||||||| |||||||||  ||| | |||| | |||||||||||| |||| ||| |||||||| |||||||  ||||||||| || |||||||||| ||||    
T  6813349 ttttgttgtgtcaaaaccgctttcatcttaaccttccacaacccgaaatcattacttctagttaacttctcgatgtcccactttgaacccatgatactca 6813448  T
Q  494 cttgaccaatttac 507  Q
    ||| ||||| ||||    
T  6813449 ctttaccaacttac 6813462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 477
Target Start/End: Complemental strand, 23799999 - 23799911
Alignment:
Q  389 acacacttttgttttgtcaaaacatcttgcgtctttatcttccacaacccaaaattattgcttctagtaaacttcttaatgtcccactt 477  Q
    ||||||||||||| |||||||||  ||||| |||| | ||||||||||||||||| ||| ||||  || |||||||  |||||||||||    
T  23799999 acacacttttgttgtgtcaaaaccgcttgcatcttaaccttccacaacccaaaatcattacttccggtgaacttctcgatgtcccactt 23799911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 238
Target Start/End: Complemental strand, 5591640 - 5591550
Alignment:
Q  148 ctccaccatcctaaatgagtagagttgttgtttcaagaattgtctataagtcaatgacttgaacatatacaataactcgaatttggaccac 238  Q
    |||||||||| | ||||| ||||||||||| || | |||||| |||| || ||| ||||||| |||||||||| |||| || || ||||||    
T  5591640 ctccaccatcttgaatgaatagagttgttgcttaaggaattgcctatgagccaaagacttgatcatatacaatgactccaactttgaccac 5591550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 194
Target Start/End: Original strand, 35744799 - 35744845
Alignment:
Q  148 ctccaccatcctaaatgagtagagttgttgtttcaagaattgtctat 194  Q
    |||||||||| | ||||||||||||||||| ||||||| ||||||||    
T  35744799 ctccaccatcttgaatgagtagagttgttgcttcaagagttgtctat 35744845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 185
Target Start/End: Original strand, 6813102 - 6813139
Alignment:
Q  148 ctccaccatcctaaatgagtagagttgttgtttcaaga 185  Q
    |||||||||| | |||||||||||||||||||||||||    
T  6813102 ctccaccatcttcaatgagtagagttgttgtttcaaga 6813139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 4732413 - 4732341
Alignment:
Q  148 ctccaccatcctaaatgagtagagttgttgtttcaagaattgtctataagtcaatgacttgaacatatacaat 220  Q
    |||||||||| | ||||||||||||||||| || | |||||| |||| || ||| ||||||  ||||||||||    
T  4732413 ctccaccatcttgaatgagtagagttgttgcttaaggaattgcctatgagccaaagacttggtcatatacaat 4732341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 269 - 329
Target Start/End: Complemental strand, 23800118 - 23800058
Alignment:
Q  269 tcccttataaccttatctccgagacatagaaaaataacactttttgtctagtctatcatct 329  Q
    |||||||  ||||||||||||||||||| || |||  ||||||||| || |||||||||||    
T  23800118 tcccttaagaccttatctccgagacataaaacaatggcactttttgccttgtctatcatct 23800058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 389 - 477
Target Start/End: Complemental strand, 9185594 - 9185506
Alignment:
Q  389 acacacttttgttttgtcaaaacatcttgcgtctttatcttccacaacccaaaattattgcttctagtaaacttcttaatgtcccactt 477  Q
    ||||||||||||| |||||||||  ||||| |||| | |||||||||||| |||||||| ||||| || |||||||  |||||||||||    
T  9185594 acacacttttgttgtgtcaaaaccgcttgcatcttaaccttccacaacccgaaattattacttctggtgaacttctcgatgtcccactt 9185506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 389 - 477
Target Start/End: Original strand, 49091327 - 49091415
Alignment:
Q  389 acacacttttgttttgtcaaaacatcttgcgtctttatcttccacaacccaaaattattgcttctagtaaacttcttaatgtcccactt 477  Q
    ||||||||||||| |||||||||  ||||| |||| | |||||||||||| |||| ||| |||||||| |||||||  |||||||||||    
T  49091327 acacacttttgttgtgtcaaaaccgcttgcatcttaaccttccacaacccgaaatcattacttctagtgaacttctcgatgtcccactt 49091415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 477
Target Start/End: Original strand, 12405987 - 12406075
Alignment:
Q  389 acacacttttgttttgtcaaaacatcttgcgtctttatcttccacaacccaaaattattgcttctagtaaacttcttaatgtcccactt 477  Q
    ||||||||||||| |||||||||  ||||| |||| | |||||||||| | |||| ||| ||||  ||||||||||  |||||||||||    
T  12405987 acacacttttgttgtgtcaaaactgcttgcatcttaaccttccacaactcgaaatcattacttccggtaaacttctcgatgtcccactt 12406075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 477
Target Start/End: Original strand, 18413308 - 18413396
Alignment:
Q  389 acacacttttgttttgtcaaaacatcttgcgtctttatcttccacaacccaaaattattgcttctagtaaacttcttaatgtcccactt 477  Q
    ||||||||||||| |||||||||  ||||| |||| | |||||||||||| |||| ||| ||||  || |||||||  |||||||||||    
T  18413308 acacacttttgttgtgtcaaaactgcttgcatcttaaccttccacaacccgaaatcattacttccggtgaacttctcgatgtcccactt 18413396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 207
Target Start/End: Original strand, 22811276 - 22811335
Alignment:
Q  148 ctccaccatcctaaatgagtagagttgttgtttcaagaattgtctataagtcaatgactt 207  Q
    |||||||||||||| ||||||| ||||||||||||| || | | |||||||||| |||||    
T  22811276 ctccaccatcctaattgagtagggttgttgtttcaaaaactatatataagtcaaagactt 22811335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 194
Target Start/End: Original strand, 21988329 - 21988375
Alignment:
Q  148 ctccaccatcctaaatgagtagagttgttgtttcaagaattgtctat 194  Q
    |||||||||| | ||||||||||||||||||||||||| ||| ||||    
T  21988329 ctccaccatcttgaatgagtagagttgttgtttcaagagttgcctat 21988375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 5817863 - 5817826
Alignment:
Q  148 ctccaccatcctaaatgagtagagttgttgtttcaaga 185  Q
    |||||||||| | |||||||||||||||||||||||||    
T  5817863 ctccaccatcttgaatgagtagagttgttgtttcaaga 5817826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 201
Target Start/End: Complemental strand, 22870712 - 22870659
Alignment:
Q  148 ctccaccatcctaaatgagtagagttgttgtttcaagaattgtctataagtcaa 201  Q
    |||||||||||||| ||||||  ||||||||||||| |||| || |||||||||    
T  22870712 ctccaccatcctaattgagtaaggttgttgtttcaaaaattatcaataagtcaa 22870659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 269 - 329
Target Start/End: Original strand, 18413188 - 18413248
Alignment:
Q  269 tcccttataaccttatctccgagacatagaaaaataacactttttgtctagtctatcatct 329  Q
    |||||||  ||||||||||||||||||| || |||| |||| |||| || |||||||||||    
T  18413188 tcccttaagaccttatctccgagacataaaacaatagcactctttgccttgtctatcatct 18413248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 269 - 329
Target Start/End: Original strand, 21645555 - 21645615
Alignment:
Q  269 tcccttataaccttatctccgagacatagaaaaataacactttttgtctagtctatcatct 329  Q
    |||||||  ||||||||||||||||||| || |||| |||| |||| || |||||||||||    
T  21645555 tcccttaagaccttatctccgagacataaaacaatagcactctttgccttgtctatcatct 21645615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 477
Target Start/End: Original strand, 21645675 - 21645763
Alignment:
Q  389 acacacttttgttttgtcaaaacatcttgcgtctttatcttccacaacccaaaattattgcttctagtaaacttcttaatgtcccactt 477  Q
    ||||||||||  | |||||||||  ||||| |||| |||||||||||||| |||| ||| ||||  || |||||||  |||||||||||    
T  21645675 acacactttttatgtgtcaaaaccgcttgcatcttaatcttccacaacccgaaatcattacttccggtgaacttctcgatgtcccactt 21645763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 477
Target Start/End: Original strand, 18232510 - 18232598
Alignment:
Q  389 acacacttttgttttgtcaaaacatcttgcgtctttatcttccacaacccaaaattattgcttctagtaaacttcttaatgtcccactt 477  Q
    ||||||||||||| |||||||||  ||||| |||| | ||||||||||||||||| ||| ||||  || |||||||  |||||||||||    
T  18232510 acacacttttgttgtgtcaaaaccgcttgcatcttaaccttccacaacccaaaatcattacttccggtgaacttctcgatgtcccactt 18232598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 16553431 - 16553360
Alignment:
Q  148 ctccaccatcctaaatgagtagagttgttgtttcaagaattgtctataagtcaatgacttgaacatatacaa 219  Q
    |||||||||| | ||||||||||||||||| || | ||||||||||| || ||| ||||||  |||||||||    
T  16553431 ctccaccatcttgaatgagtagagttgttgcttaaggaattgtctatgagccaacgacttggtcatatacaa 16553360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 16629987 - 16629916
Alignment:
Q  148 ctccaccatcctaaatgagtagagttgttgtttcaagaattgtctataagtcaatgacttgaacatatacaa 219  Q
    |||||||||| | ||||||||||||||||| || | ||||||||||| || ||| ||||||  |||||||||    
T  16629987 ctccaccatcttgaatgagtagagttgttgcttaaggaattgtctatgagccaacgacttggtcatatacaa 16629916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 16651691 - 16651620
Alignment:
Q  148 ctccaccatcctaaatgagtagagttgttgtttcaagaattgtctataagtcaatgacttgaacatatacaa 219  Q
    |||||||||| | ||||||||||||||||| || | ||||||||||| || ||| ||||||  |||||||||    
T  16651691 ctccaccatcttgaatgagtagagttgttgcttaaggaattgtctatgagccaacgacttggtcatatacaa 16651620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 505
Target Start/End: Original strand, 9035947 - 9036064
Alignment:
Q  389 acacacttttgttttgtcaaaacatcttgcgtctttatcttccacaacccaaaattattgcttctagtaaacttcttaatgtcccac-ttcaacccatga 487  Q
    ||||||||||||  || |||||   ||||| |||| | |||||||||||  |||| ||| |||||||| ||||||| |||||||||| || |||||||||    
T  9035947 acacacttttgtggtgccaaaatcgcttgcatcttaaccttccacaacctgaaatcattacttctagtgaacttctcaatgtcccactttgaacccatga 9036046  T
Q  488 tgctcacttgaccaattt 505  Q
      | ||||| ||||||||    
T  9036047 gacacactttaccaattt 9036064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 149 - 189
Target Start/End: Original strand, 26309909 - 26309949
Alignment:
Q  149 tccaccatcctaaatgagtagagttgttgtttcaagaattg 189  Q
    ||||||||||||||||| | ||||| |||||||||||||||    
T  26309909 tccaccatcctaaatgaatggagttattgtttcaagaattg 26309949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 477
Target Start/End: Complemental strand, 9224841 - 9224753
Alignment:
Q  389 acacacttttgttttgtcaaaacatcttgcgtctttatcttccacaacccaaaattattgcttctagtaaacttcttaatgtcccactt 477  Q
    ||||||||||||| |||||||||  ||||| |||| | |||||||||||| |||| ||| ||||  || |||||||| |||||||||||    
T  9224841 acacacttttgttgtgtcaaaaccgcttgcatcttaaccttccacaacccgaaatcattacttccggtgaacttcttgatgtcccactt 9224753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 477
Target Start/End: Complemental strand, 16624442 - 16624354
Alignment:
Q  389 acacacttttgttttgtcaaaacatcttgcgtctttatcttccacaacccaaaattattgcttctagtaaacttcttaatgtcccactt 477  Q
    ||||||||||||| |||||||||  ||||| |||| | |||||||||||| |||| ||| ||||  || |||||||  |||||||||||    
T  16624442 acacacttttgttgtgtcaaaaccgcttgcatcttaaccttccacaacccgaaatcattacttccggtgaacttctcgatgtcccactt 16624354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 7123463 - 7123392
Alignment:
Q  148 ctccaccatcctaaatgagtagagttgttgtttcaagaattgtctataagtcaatgacttgaacatatacaa 219  Q
    |||||||||| | ||||||||||||||||| || | ||||||||||| || ||| ||||||  |||||||||    
T  7123463 ctccaccatcttgaatgagtagagttgttgcttaaggaattgtctatgagccaacgacttggtcatatacaa 7123392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 8394173 - 8394102
Alignment:
Q  148 ctccaccatcctaaatgagtagagttgttgtttcaagaattgtctataagtcaatgacttgaacatatacaa 219  Q
    |||||||||| | ||||||||||||||||| || | ||||||||||| || ||| ||||||  |||||||||    
T  8394173 ctccaccatcttgaatgagtagagttgttgcttgaggaattgtctatgagccaacgacttggtcatatacaa 8394102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 31480946 - 31480992
Alignment:
Q  139 aggtttaagctccaccatcctaaatgagtagagttgttgtttcaaga 185  Q
    |||||||  ||||||||||| ||||||||||| ||||||||||||||    
T  31480946 aggtttagactccaccatccaaaatgagtagaattgttgtttcaaga 31480992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 238
Target Start/End: Original strand, 52094776 - 52094865
Alignment:
Q  149 tccaccatcctaaatgagtagagttgttgtttcaagaattgtctataagtcaatgacttgaacatatacaataactcgaatttggaccac 238  Q
    ||||||||| | ||||||||||||||||| || | |||||| |||| || ||| ||||||  |||||||||| |||| || || ||||||    
T  52094776 tccaccatcttgaatgagtagagttgttgcttaaggaattgcctatgagccaaagacttggtcatatacaatgactccaactttgaccac 52094865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 188
Target Start/End: Complemental strand, 5350618 - 5350578
Alignment:
Q  148 ctccaccatcctaaatgagtagagttgttgtttcaagaatt 188  Q
    ||||||| || |||||||||||||||||||||| |||||||    
T  5350618 ctccaccttcttaaatgagtagagttgttgttttaagaatt 5350578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 393 - 477
Target Start/End: Complemental strand, 3323980 - 3323896
Alignment:
Q  393 acttttgttttgtcaaaacatcttgcgtctttatcttccacaacccaaaattattgcttctagtaaacttcttaatgtcccactt 477  Q
    ||||||||| |||||||||  ||||| |||| | |||||||||||| |||| ||| |||||||| |||||||  |||||||||||    
T  3323980 acttttgttgtgtcaaaaccgcttgcatcttaaccttccacaacccgaaatcattacttctagtgaacttctcgatgtcccactt 3323896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 238
Target Start/End: Original strand, 22834421 - 22834511
Alignment:
Q  148 ctccaccatcctaaatgagtagagttgttgtttcaagaattgtctataagtcaatgacttgaacatatacaataactcgaatttggaccac 238  Q
    |||||||||| | ||||| ||||||||||| || | |||||| |||| || ||| ||||||| |||||||||| |||| || || ||||||    
T  22834421 ctccaccatcttgaatgaatagagttgttgcttaaggaattgcctatgagccaaagacttgatcatatacaatgactccaactttgaccac 22834511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 189
Target Start/End: Complemental strand, 5898211 - 5898170
Alignment:
Q  148 ctccaccatcctaaatgagtagagttgttgtttcaagaattg 189  Q
    |||||||||| ||||||||||||||||||| || ||||||||    
T  5898211 ctccaccatcttaaatgagtagagttgttgctttaagaattg 5898170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 10209956 - 10209884
Alignment:
Q  148 ctccaccatcctaaatgagtagagttgttgtttcaagaattgtctataagtcaatgacttgaacatatacaat 220  Q
    |||||||||| | ||||||||||||||||| || | |||||| |||| || ||| ||||||  ||||||||||    
T  10209956 ctccaccatcttgaatgagtagagttgttgcttaaggaattgcctatgagccaacgacttggtcatatacaat 10209884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 477
Target Start/End: Original strand, 16388113 - 16388201
Alignment:
Q  389 acacacttttgttttgtcaaaacatcttgcgtctttatcttccacaacccaaaattattgcttctagtaaacttcttaatgtcccactt 477  Q
    |||||| |||||| ||||||||| |||||| |||| | ||||||||||||||||| ||| ||||  || |||||||  |||||||||||    
T  16388113 acacacatttgttgtgtcaaaacctcttgcatcttaaccttccacaacccaaaatcattacttccggtgaacttctcgatgtcccactt 16388201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 477
Target Start/End: Complemental strand, 10445877 - 10445789
Alignment:
Q  389 acacacttttgttttgtcaaaacatcttgcgtctttatcttccacaacccaaaattattgcttctagtaaacttcttaatgtcccactt 477  Q
    ||||||||||||| ||| |||||  ||||| |||| | ||||||||||||||||| ||| ||||  || |||||||  |||||||||||    
T  10445877 acacacttttgttgtgttaaaaccgcttgcatcttaaccttccacaacccaaaatcattacttccggtgaacttctcgatgtcccactt 10445789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 477
Target Start/End: Original strand, 19348927 - 19349015
Alignment:
Q  389 acacacttttgttttgtcaaaacatcttgcgtctttatcttccacaacccaaaattattgcttctagtaaacttcttaatgtcccactt 477  Q
    ||||||||||||| |||||| ||  ||||| |||| | |||||| |||||||||| ||||||||  || |||||||  |||||||||||    
T  19348927 acacacttttgttgtgtcaataccgcttgcatcttaaccttccataacccaaaatcattgcttccggtgaacttctcgatgtcccactt 19349015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 477
Target Start/End: Original strand, 25403300 - 25403388
Alignment:
Q  389 acacacttttgttttgtcaaaacatcttgcgtctttatcttccacaacccaaaattattgcttctagtaaacttcttaatgtcccactt 477  Q
    ||||||||||||| |||||||||  ||||| |||| | |||||||||||| |||| ||| ||||  || |||||||  |||||||||||    
T  25403300 acacacttttgttgtgtcaaaaccgcttgcatcttaaccttccacaacccgaaatcattacttccggtgaacttctcgatgtcccactt 25403388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 194
Target Start/End: Original strand, 19348686 - 19348732
Alignment:
Q  148 ctccaccatcctaaatgagtagagttgttgtttcaagaattgtctat 194  Q
    |||||||||| | ||||||||||||||||| ||||||| ||||||||    
T  19348686 ctccaccatcttgaatgagtagagttgttgcttcaagagttgtctat 19348732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 177
Target Start/End: Original strand, 21520150 - 21520179
Alignment:
Q  148 ctccaccatcctaaatgagtagagttgttg 177  Q
    ||||||||||||||||||||||||||||||    
T  21520150 ctccaccatcctaaatgagtagagttgttg 21520179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 477
Target Start/End: Complemental strand, 23078904 - 23078816
Alignment:
Q  389 acacacttttgttttgtcaaaacatcttgcgtctttatcttccacaacccaaaattattgcttctagtaaacttcttaatgtcccactt 477  Q
    ||||||||||||| |||||||||  ||||| |||| | |||||||||||| |||| ||| ||||  || |||||||  |||| ||||||    
T  23078904 acacacttttgttgtgtcaaaaccgcttgcatcttaaccttccacaacccgaaatcattacttccggtgaacttctcgatgttccactt 23078816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 148 - 219
Target Start/End: Original strand, 35287779 - 35287850
Alignment:
Q  148 ctccaccatcctaaatgagtagagttgttgtttcaagaattgtctataagtcaatgacttgaacatatacaa 219  Q
    |||||||||||||||||| |||| ||| ||||||| ||||||||||| ||| || ||||||  |||||||||    
T  35287779 ctccaccatcctaaatgattagaattgctgtttcatgaattgtctatgagttaacgacttggtcatatacaa 35287850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 477
Target Start/End: Original strand, 27449472 - 27449560
Alignment:
Q  389 acacacttttgttttgtcaaaacatcttgcgtctttatcttccacaacccaaaattattgcttctagtaaacttcttaatgtcccactt 477  Q
    ||||||||||||| |||||||||  ||||| |||| | |||||||||||| |||| ||| ||||  || |||||||  |||||||||||    
T  27449472 acacacttttgttgtgtcaaaaccgcttgcatcttaaccttccacaacccgaaatcattacttccggtgaacttctcgatgtcccactt 27449560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 477
Target Start/End: Original strand, 43598386 - 43598474
Alignment:
Q  389 acacacttttgttttgtcaaaacatcttgcgtctttatcttccacaacccaaaattattgcttctagtaaacttcttaatgtcccactt 477  Q
    ||||||||||||| |||||||||  ||||| |||| | |||||||||||| |||| ||| ||||  || |||||||  |||||||||||    
T  43598386 acacacttttgttgtgtcaaaaccgcttgcatcttaaccttccacaacccgaaatcattacttccggtgaacttctcgatgtcccactt 43598474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 477
Target Start/End: Original strand, 43603878 - 43603966
Alignment:
Q  389 acacacttttgttttgtcaaaacatcttgcgtctttatcttccacaacccaaaattattgcttctagtaaacttcttaatgtcccactt 477  Q
    ||||||||||||| |||||||||  ||||| |||| | |||||||||||| |||| ||| ||||  || |||||||  |||||||||||    
T  43603878 acacacttttgttgtgtcaaaaccgcttgcatcttaaccttccacaacccgaaatcattacttccggtgaacttctcgatgtcccactt 43603966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 477
Target Start/End: Original strand, 43609370 - 43609458
Alignment:
Q  389 acacacttttgttttgtcaaaacatcttgcgtctttatcttccacaacccaaaattattgcttctagtaaacttcttaatgtcccactt 477  Q
    ||||||||||||| |||||||||  ||||| |||| | |||||||||||| |||| ||| ||||  || |||||||  |||||||||||    
T  43609370 acacacttttgttgtgtcaaaaccgcttgcatcttaaccttccacaacccgaaatcattacttccggtgaacttctcgatgtcccactt 43609458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 504
Target Start/End: Complemental strand, 534272 - 534157
Alignment:
Q  390 cacacttttgttttgtcaaaacatcttgcgtctttatcttccacaacccaaaattattgcttctagtaaacttcttaatgtcccac-ttcaacccatgat 488  Q
    |||||||||||| | |||| ||  ||||| |||| | |||||| |||||||||| ||| ||||  || ||||||| ||| |||||| || ||||||||||    
T  534272 cacacttttgttgtatcaacaccgcttgcatcttcaccttccataacccaaaatcattacttccggtgaacttctcaatatcccactttgaacccatgat 534173  T
Q  489 gctcacttgaccaatt 504  Q
     ||||||| |||||||    
T  534172 actcacttaaccaatt 534157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 40380871 - 40380800
Alignment:
Q  148 ctccaccatcctaaatgagtagagttgttgtttcaagaattgtctataagtcaatgacttgaacatatacaa 219  Q
    |||||||||| | ||||||||||||||||| || | ||||||||||| || ||| ||||||  |||||||||    
T  40380871 ctccaccatcttgaatgagtagagttgttgcttaaggaattgtctatgagccaacgacttggtcatatacaa 40380800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 194
Target Start/End: Original strand, 33790724 - 33790770
Alignment:
Q  148 ctccaccatcctaaatgagtagagttgttgtttcaagaattgtctat 194  Q
    |||||||||| | ||||||||||||||||| ||||||| ||||||||    
T  33790724 ctccaccatcttgaatgagtagagttgttgcttcaagagttgtctat 33790770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 139 - 193
Target Start/End: Original strand, 34842016 - 34842070
Alignment:
Q  139 aggtttaagctccaccatcctaaatgagtagagttgttgtttcaagaattgtcta 193  Q
    |||||||  |||||||||| | |||||||||||||||| |||||| |||||||||    
T  34842016 aggtttagactccaccatcttgaatgagtagagttgttatttcaaaaattgtcta 34842070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 477
Target Start/End: Complemental strand, 31397429 - 31397341
Alignment:
Q  389 acacacttttgttttgtcaaaacatcttgcgtctttatcttccacaacccaaaattattgcttctagtaaacttcttaatgtcccactt 477  Q
    ||||||||||||| |||||| ||  ||||| |||| | |||||| ||||| |||| ||| |||| ||| |||||||  |||||||||||    
T  31397429 acacacttttgttgtgtcaataccacttgcatcttaaccttccataacccgaaatcattacttccagtgaacttctcgatgtcccactt 31397341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0842 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0842
Description:

Target: scaffold0842; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 477
Target Start/End: Complemental strand, 3629 - 3541
Alignment:
Q  389 acacacttttgttttgtcaaaacatcttgcgtctttatcttccacaacccaaaattattgcttctagtaaacttcttaatgtcccactt 477  Q
    ||||||||||||| ||||||||   ||||| |||| | ||||||||||||||||| ||| ||||  || |||||||  |||||||||||    
T  3629 acacacttttgttgtgtcaaaatcacttgcatcttaaccttccacaacccaaaatcattacttccggtgaacttctcgatgtcccactt 3541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 477
Target Start/End: Original strand, 41397889 - 41397977
Alignment:
Q  389 acacacttttgttttgtcaaaacatcttgcgtctttatcttccacaacccaaaattattgcttctagtaaacttcttaatgtcccactt 477  Q
    ||||||||||||| |||||| ||  ||||| |||| | |||||||||||| |||| ||| ||||| || |||||||  |||||||||||    
T  41397889 acacacttttgttgtgtcaataccgcttgcatcttaaccttccacaacccgaaatcattacttctggtgaacttctcgatgtcccactt 41397977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 477
Target Start/End: Complemental strand, 19359275 - 19359187
Alignment:
Q  389 acacacttttgttttgtcaaaacatcttgcgtctttatcttccacaacccaaaattattgcttctagtaaacttcttaatgtcccactt 477  Q
    ||||||||||||| ||||||||   ||||| |||| | |||||||||||| |||| ||| ||||  || |||||||  |||||||||||    
T  19359275 acacacttttgttgtgtcaaaaacgcttgcatcttaaccttccacaacccgaaatcattacttccggtgaacttctcgatgtcccactt 19359187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 220
Target Start/End: Complemental strand, 115357 - 115286
Alignment:
Q  149 tccaccatcctaaatgagtagagttgttgtttcaagaattgtctataagtcaatgacttgaacatatacaat 220  Q
    ||||||||| | ||||||||||||||||| || | ||||||||||| || ||| ||||||  ||||||||||    
T  115357 tccaccatcttgaatgagtagagttgttgcttaaggaattgtctatgagccaaagacttggtcatatacaat 115286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 477
Target Start/End: Complemental strand, 18381 - 18293
Alignment:
Q  389 acacacttttgttttgtcaaaacatcttgcgtctttatcttccacaacccaaaattattgcttctagtaaacttcttaatgtcccactt 477  Q
    ||||||||||||| |||||||||  ||||| |||| | |||||||||||| |||| ||| ||||  || || ||||  |||||||||||    
T  18381 acacacttttgttgtgtcaaaaccgcttgcatcttaaccttccacaacccgaaatcattacttccggtgaatttctcgatgtcccactt 18293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 269 - 329
Target Start/End: Complemental strand, 18501 - 18441
Alignment:
Q  269 tcccttataaccttatctccgagacatagaaaaataacactttttgtctagtctatcatct 329  Q
    |||||||  ||||||||||||||||||| || |||| |||| |||| || |||||||||||    
T  18501 tcccttaagaccttatctccgagacataaaacaatagcactctttgccttgtctatcatct 18441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 477
Target Start/End: Original strand, 2157 - 2245
Alignment:
Q  389 acacacttttgttttgtcaaaacatcttgcgtctttatcttccacaacccaaaattattgcttctagtaaacttcttaatgtcccactt 477  Q
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T  2157 acacacttttgttgtatcaaaaccgcttgcatcttaaccttccacaacccgaaatcattacttccggtgaacttctcgatgtcccactt 2245  T

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