View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18996_high_8 (Length: 470)

Name: NF18996_high_8
Description: NF18996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18996_high_8
NF18996_high_8
[»] chr4 (5 HSPs)
chr4 (1-451)||(21552453-21552901)
chr4 (28-70)||(12690011-12690053)
chr4 (1-74)||(30064072-30064145)
chr4 (49-78)||(831316-831345)
chr4 (1-74)||(13388477-13388552)
[»] chr8 (10 HSPs)
chr8 (1-78)||(45522359-45522435)
chr8 (1-67)||(45522207-45522272)
chr8 (14-69)||(5899456-5899510)
chr8 (28-67)||(35795313-35795352)
chr8 (28-78)||(5645519-5645569)
chr8 (25-70)||(9499002-9499047)
chr8 (26-70)||(9499133-9499178)
chr8 (24-70)||(29219168-29219216)
chr8 (99-156)||(38276395-38276452)
chr8 (28-74)||(45163475-45163523)
[»] chr1 (8 HSPs)
chr1 (29-78)||(37008314-37008363)
chr1 (28-70)||(39384503-39384545)
chr1 (46-78)||(40345394-40345426)
chr1 (100-151)||(1031158-1031209)
chr1 (1-66)||(37008466-37008531)
chr1 (28-77)||(43117351-43117401)
chr1 (28-74)||(45719621-45719667)
chr1 (24-70)||(1406403-1406451)
[»] chr2 (7 HSPs)
chr2 (129-208)||(17296613-17296691)
chr2 (1-78)||(35500256-35500335)
chr2 (1-78)||(29370786-29370863)
chr2 (24-80)||(3198698-3198754)
chr2 (28-67)||(8740250-8740289)
chr2 (26-84)||(43519368-43519427)
chr2 (28-71)||(4423517-4423561)
[»] chr5 (7 HSPs)
chr5 (25-78)||(13427894-13427947)
chr5 (14-79)||(11167956-11168020)
chr5 (15-78)||(42169334-42169395)
chr5 (28-79)||(20126582-20126635)
chr5 (28-74)||(7611340-7611385)
chr5 (25-70)||(22408721-22408767)
chr5 (24-70)||(37426631-37426677)
[»] chr7 (9 HSPs)
chr7 (1-74)||(35398236-35398308)
chr7 (1-78)||(43077968-43078047)
chr7 (1-78)||(9477357-9477434)
chr7 (24-70)||(24432428-24432474)
chr7 (28-70)||(44565524-44565565)
chr7 (25-70)||(15327920-15327965)
chr7 (1-78)||(26787834-26787910)
chr7 (27-80)||(47030370-47030422)
chr7 (1-78)||(30283631-30283709)
[»] chr3 (15 HSPs)
chr3 (26-70)||(45333714-45333757)
chr3 (25-78)||(1807172-1807226)
chr3 (25-78)||(1807570-1807623)
chr3 (10-71)||(36618856-36618916)
chr3 (24-67)||(26466060-26466104)
chr3 (14-70)||(50420797-50420852)
chr3 (1-78)||(51453611-51453689)
chr3 (25-79)||(941564-941619)
chr3 (28-67)||(37755116-37755155)
chr3 (109-159)||(20844777-20844827)
chr3 (23-84)||(6588006-6588067)
chr3 (26-78)||(11413339-11413392)
chr3 (23-84)||(29070090-29070151)
chr3 (100-156)||(41877193-41877249)
chr3 (14-70)||(43902614-43902669)
[»] chr6 (2 HSPs)
chr6 (45-78)||(1614966-1614999)
chr6 (25-74)||(12798962-12799013)
[»] scaffold0229 (1 HSPs)
scaffold0229 (100-151)||(21996-22047)
[»] scaffold0219 (1 HSPs)
scaffold0219 (117-151)||(13394-13428)


Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 451
Target Start/End: Complemental strand, 21552901 - 21552453
Alignment:
Q  1 caaaaccgcctcttaagtattgcccccttttgcagttttggccgcaggccaattttgaccaagtcaatgcacacgtggcccccatgccaannnnnnnnct 100  Q
    |||||||||| |||||||||||| || |||||||||||||||| || |||||||||||| |||||||||||||||||||||||| |||||        ||    
T  21552901 caaaaccgccccttaagtattgctcc-ttttgcagttttggccccaagccaattttgacaaagtcaatgcacacgtggcccccaagccaattttttt-ct 21552804  T
Q  101 tttcaaaatgagttgactcacgctgaatatttttcagcatgagttaactcatgtagacatttttaaaacttggtgaatgagaaaaaactaaaaggagaag 200  Q
    ||||||||||||||||||||||||  | ||||||||||||||||| ||||||||||||| ||| |||||| ||||||||||||||||| |||||||||||    
T  21552803 tttcaaaatgagttgactcacgctagacatttttcagcatgagttgactcatgtagacacttt-aaaactcggtgaatgagaaaaaacaaaaaggagaag 21552705  T
Q  201 aacaattttcattcagacgaaagagaaaaatttaacatcacaatta--attta--ctaagagaaatgttaacgacact--------aagagtatcttggg 288  Q
    | |||||||||||||||||||||||||||||||||||||||||||   ||| |  |||||||||||||||| ||||||        || | |||||| ||    
T  21552704 agcaattttcattcagacgaaagagaaaaatttaacatcacaattttcattcagactaagagaaatgttaatgacactctctttttaacactatcttagg 21552605  T
Q  289 tagaaattgcttaggactgttttaggacagttacacttagtcttttgggaaattggaccatccaaattatgaaattgtctttactcataacatgtcaaat 388  Q
    |||||||||||||||||           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21552604 tagaaattgcttaggac-----------agttacacttggtcttttgggaaattggaccatccaaattatgaaattgtctttactcataacatgtcaaat 21552516  T
Q  389 ttttattggtcacaattacgcttcatttccccttgcattcatatacacaaggacatataaaag 451  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21552515 ttttattggtcacaattacgcttcatttccccttgcattcatatacacaaggacatataaaag 21552453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 12690053 - 12690011
Alignment:
Q  28 ttttgcagttttggccgcaggccaattttgaccaagtcaatgc 70  Q
    |||||||||||||||| |||| |||||||||||||||||||||    
T  12690053 ttttgcagttttggccccagggcaattttgaccaagtcaatgc 12690011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 30064072 - 30064145
Alignment:
Q  1 caaaaccgcctcttaagtattgcccccttttgcagttttggccg-caggccaattttgaccaagtcaatgcacac 74  Q
    |||||||||| ||||||||||| |   ||||||||||||||||  | ||||||||||||||||||||||||||||    
T  30064072 caaaaccgccccttaagtattgactt-ttttgcagttttggccctctggccaattttgaccaagtcaatgcacac 30064145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 78
Target Start/End: Complemental strand, 831345 - 831316
Alignment:
Q  49 ccaattttgaccaagtcaatgcacacgtgg 78  Q
    ||||||||||||||||||||||||||||||    
T  831345 ccaattttgaccaagtcaatgcacacgtgg 831316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 13388552 - 13388477
Alignment:
Q  1 caaaaccgcctcttaagtattgcccccttttgcagttttgg--ccgcaggccaattttgaccaagtcaatgcacac 74  Q
    |||||||||| ||||||||||| |   ||||||||||||||  || |||| ||||||| || ||||||||||||||    
T  13388552 caaaaccgccccttaagtattgactttttttgcagttttgggtcctcaggacaattttaacaaagtcaatgcacac 13388477  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 45522435 - 45522359
Alignment:
Q  1 caaaaccgcctcttaagtattgcccccttttgcagttttggccgcaggccaattttgaccaagtcaatgcacacgtgg 78  Q
    |||||||||| | ||||||||||||| |||||||||||||||| ||| |||||||| |||||||||||||||||||||    
T  45522435 caaaaccgccccctaagtattgcccc-ttttgcagttttggccccagaccaattttaaccaagtcaatgcacacgtgg 45522359  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 45522207 - 45522272
Alignment:
Q  1 caaaaccgcctcttaagtattgcccccttttgcagttttggccgcaggccaattttgaccaagtcaa 67  Q
    |||||||||| | ||||||||||||| |||||||||||||||| |||  ||||||||||||||||||    
T  45522207 caaaaccgccccctaagtattgcccc-ttttgcagttttggccccagatcaattttgaccaagtcaa 45522272  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 5899510 - 5899456
Alignment:
Q  14 taagtattgcccccttttgcagttttggccgcaggccaattttgaccaagtcaatg 69  Q
    ||||||||||| | |||||||||||||||| ||| |||||||||||||||||||||    
T  5899510 taagtattgcctc-ttttgcagttttggccccagaccaattttgaccaagtcaatg 5899456  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 67
Target Start/End: Original strand, 35795313 - 35795352
Alignment:
Q  28 ttttgcagttttggccgcaggccaattttgaccaagtcaa 67  Q
    |||||||||||||||| || ||||||||||||||||||||    
T  35795313 ttttgcagttttggccccatgccaattttgaccaagtcaa 35795352  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 5645519 - 5645569
Alignment:
Q  28 ttttgcagttttggccgcaggccaattttgaccaagtcaatgcacacgtgg 78  Q
    ||||||||||||||||  |  |||||||||||||||||||||||| |||||    
T  5645519 ttttgcagttttggccctaaaccaattttgaccaagtcaatgcacccgtgg 5645569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 9499002 - 9499047
Alignment:
Q  25 cccttttgcagttttggccgcaggccaattttgaccaagtcaatgc 70  Q
    |||||||||||||||| || || ||||||||||||||||| |||||    
T  9499002 cccttttgcagttttgaccccaagccaattttgaccaagtgaatgc 9499047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 9499178 - 9499133
Alignment:
Q  26 ccttttgcagttttggcc-gcaggccaattttgaccaagtcaatgc 70  Q
    ||||||||||||||| || | |||||||||||||||||||||||||    
T  9499178 ccttttgcagttttgacctgtaggccaattttgaccaagtcaatgc 9499133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 29219168 - 29219216
Alignment:
Q  24 ccccttttgcagttttggccgc--aggccaattttgaccaagtcaatgc 70  Q
    |||||||||||||||||||| |  | |||||||||||||||||||||||    
T  29219168 ccccttttgcagttttggccccccaagccaattttgaccaagtcaatgc 29219216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 156
Target Start/End: Original strand, 38276395 - 38276452
Alignment:
Q  99 cttttcaaaatgagttgactcacgctgaatatttttcagcatgagttaactcatgtag 156  Q
    ||||||||  |||||| |||||||| ||| ||||||||||||||||| ||||| ||||    
T  38276395 cttttcaacgtgagttaactcacgccgaacatttttcagcatgagttcactcaagtag 38276452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 74
Target Start/End: Original strand, 45163475 - 45163523
Alignment:
Q  28 ttttgcagttttggccgc--aggccaattttgaccaagtcaatgcacac 74  Q
    |||||||||||||||| |  |||||||||||||| ||||||||||||||    
T  45163475 ttttgcagttttggcctcccaggccaattttgacaaagtcaatgcacac 45163523  T

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Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 37008314 - 37008363
Alignment:
Q  29 tttgcagttttggccgcaggccaattttgaccaagtcaatgcacacgtgg 78  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  37008314 tttgcagttttggccccaggccaattttgaccaagtcaatgcacacgtgg 37008363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 39384545 - 39384503
Alignment:
Q  28 ttttgcagttttggccgcaggccaattttgaccaagtcaatgc 70  Q
    |||||||||||||||| ||| ||||||||||||||||||||||    
T  39384545 ttttgcagttttggccccagaccaattttgaccaagtcaatgc 39384503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 78
Target Start/End: Original strand, 40345394 - 40345426
Alignment:
Q  46 aggccaattttgaccaagtcaatgcacacgtgg 78  Q
    |||||||||||||||||||||||||||||||||    
T  40345394 aggccaattttgaccaagtcaatgcacacgtgg 40345426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 151
Target Start/End: Original strand, 1031158 - 1031209
Alignment:
Q  100 ttttcaaaatgagttgactcacgctgaatatttttcagcatgagttaactca 151  Q
    |||||||  |||||| |||||||||||| |||||||||| ||||||||||||    
T  1031158 ttttcaacttgagttaactcacgctgaacatttttcagcgtgagttaactca 1031209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 37008531 - 37008466
Alignment:
Q  1 caaaaccgcctcttaagtattgcccccttttgcagttttggccgc-aggccaattttgaccaagtca 66  Q
    |||||| ||| | ||||||||||||| ||||||| |||||||| | |||||||||||||||||||||    
T  37008531 caaaactgccccctaagtattgcccc-ttttgcaattttggcccccaggccaattttgaccaagtca 37008466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 43117351 - 43117401
Alignment:
Q  28 ttttgcagttttggccgc-aggccaattttgaccaagtcaatgcacacgtg 77  Q
    |||||||||||||||| | || | |||||||||||||||||||||||||||    
T  43117351 ttttgcagttttggcccccagacaaattttgaccaagtcaatgcacacgtg 43117401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 74
Target Start/End: Complemental strand, 45719667 - 45719621
Alignment:
Q  28 ttttgcagttttggccgcaggccaattttgaccaagtcaatgcacac 74  Q
    |||| ||||||||||| ||| ||||||||||| ||||||||||||||    
T  45719667 ttttacagttttggccccagaccaattttgacaaagtcaatgcacac 45719621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 1406403 - 1406451
Alignment:
Q  24 ccccttttgcagttttggccgc--aggccaattttgaccaagtcaatgc 70  Q
    |||||||||||||||||||| |  ||| |||||||||||||||||||||    
T  1406403 ccccttttgcagttttggcccctcaggtcaattttgaccaagtcaatgc 1406451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 129 - 208
Target Start/End: Complemental strand, 17296691 - 17296613
Alignment:
Q  129 atttttcagcatgagttaactcatgtagacatttttaaaacttggtgaatgagaaaaaactaaaaggagaagaacaattt 208  Q
    |||||||||| ||| ||||||||||||| || |||||| | |||||||||||| |||||| |||||||||||||||||||    
T  17296691 atttttcagcgtgatttaactcatgtaggcacttttaaca-ttggtgaatgagcaaaaacaaaaaggagaagaacaattt 17296613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 35500335 - 35500256
Alignment:
Q  1 caaaaccgcctcttaagtattgcccccttttgcagttttggccgc---aggccaattttgaccaagtcaatgcacacgtgg 78  Q
    |||||||||| ||||||||||||||| |||||||||||||||| |   || | ||||||||||||||||||||||||||||    
T  35500335 caaaaccgccccttaagtattgcccc-ttttgcagttttggcccccacagactaattttgaccaagtcaatgcacacgtgg 35500256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 29370786 - 29370863
Alignment:
Q  1 caaaaccgcctcttaagtattgcccccttttgcagttttggccgc-aggccaattttgaccaagtcaatgcacacgtgg 78  Q
    |||||| ||| |||||||| |||||| |||||||||||||||| | | | |||||||||||||||||||||||||||||    
T  29370786 caaaactgccccttaagtactgcccc-ttttgcagttttggcccccaagtcaattttgaccaagtcaatgcacacgtgg 29370863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 3198754 - 3198698
Alignment:
Q  24 ccccttttgcagttttggccgcaggccaattttgaccaagtcaatgcacacgtggcc 80  Q
    ||||||||| ||||||| || ||| ||||||||||||||||||||||  ||||||||    
T  3198754 ccccttttgtagttttgaccccagaccaattttgaccaagtcaatgctgacgtggcc 3198698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 67
Target Start/End: Original strand, 8740250 - 8740289
Alignment:
Q  28 ttttgcagttttggccgcaggccaattttgaccaagtcaa 67  Q
    |||||||||||||||| || ||||||||||||||||||||    
T  8740250 ttttgcagttttggccccatgccaattttgaccaagtcaa 8740289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 43519427 - 43519368
Alignment:
Q  26 ccttttgcagttttgg-ccgcaggccaattttgaccaagtcaatgcacacgtggccccca 84  Q
    ||||||||| |||||| || ||| ||||||||||||||||||||||| ||||||| ||||    
T  43519427 ccttttgcacttttggtccccagaccaattttgaccaagtcaatgcatacgtggcaccca 43519368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 4423517 - 4423561
Alignment:
Q  28 ttttgcagttttggccgc-aggccaattttgaccaagtcaatgca 71  Q
    |||||||||||||||| | |||||||||||||| |||||||||||    
T  4423517 ttttgcagttttggccccgaggccaattttgacaaagtcaatgca 4423561  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 13427894 - 13427947
Alignment:
Q  25 cccttttgcagttttggccgcaggccaattttgaccaagtcaatgcacacgtgg 78  Q
    ||||||||||||||||||| || ||||||||||||||| |||||||||||||||    
T  13427894 cccttttgcagttttggccccatgccaattttgaccaactcaatgcacacgtgg 13427947  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 11167956 - 11168020
Alignment:
Q  14 taagtattgcccccttttgcagttttggccgcaggccaattttgaccaagtcaatgcacacgtggc 79  Q
    ||||||||||||| ||||||| |||||||| ||| |||||||||||| |||||| |||||||||||    
T  11167956 taagtattgcccc-ttttgcaattttggccccagaccaattttgaccgagtcaacgcacacgtggc 11168020  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 42169395 - 42169334
Alignment:
Q  15 aagtattgcccccttttgcagttttggccgcaggccaattttgaccaagtcaatgcacacgtgg 78  Q
    |||||||||||| |||||||||||||||| ||| ||||||||||  ||||||||||||||||||    
T  42169395 aagtattgcccc-ttttgcagttttggccccagaccaattttga-aaagtcaatgcacacgtgg 42169334  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 20126635 - 20126582
Alignment:
Q  28 ttttgcagttttggccgc--aggccaattttgaccaagtcaatgcacacgtggc 79  Q
    |||||||||||||||| |  || |||||||||||||||||||||||||||||||    
T  20126635 ttttgcagttttggcccctcagaccaattttgaccaagtcaatgcacacgtggc 20126582  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 74
Target Start/End: Complemental strand, 7611385 - 7611340
Alignment:
Q  28 ttttgcagttttggccgcaggccaattttgaccaagtcaatgcacac 74  Q
    |||||||||||||||| ||| ||||||||||| ||||||||||||||    
T  7611385 ttttgcagttttggcc-cagaccaattttgacaaagtcaatgcacac 7611340  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 22408767 - 22408721
Alignment:
Q  25 cccttttgcagttttggccgc-aggccaattttgaccaagtcaatgc 70  Q
    ||||||||||||||||||| | || ||||||||||||||||||||||    
T  22408767 cccttttgcagttttggcccccagaccaattttgaccaagtcaatgc 22408721  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 37426677 - 37426631
Alignment:
Q  24 ccccttttgcagttttggccgcaggccaattttgaccaagtcaatgc 70  Q
    |||||||||||||||||||| ||  ||||||||||| ||||||||||    
T  37426677 ccccttttgcagttttggccccataccaattttgacaaagtcaatgc 37426631  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 35398236 - 35398308
Alignment:
Q  1 caaaaccgcctcttaagtattgcccccttttgcagttttggccgcaggccaattttgaccaagtcaatgcacac 74  Q
    |||||||| | | ||||||||||||| ||||||||||||| || ||| ||||||||||| ||||||||||||||    
T  35398236 caaaaccgtcccctaagtattgcccc-ttttgcagttttgaccccagaccaattttgacaaagtcaatgcacac 35398308  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 43078047 - 43077968
Alignment:
Q  1 caaaaccgcctcttaagtattgcccccttttgcagttttggccgc--aggccaattttgaccaagtcaatgcacacgtgg 78  Q
    |||||| ||| ||||||||||| |   |||||||||||||||| |  || ||||||||||||||||||||||||||||||    
T  43078047 caaaacagccccttaagtattgactttttttgcagttttggccccccagaccaattttgaccaagtcaatgcacacgtgg 43077968  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 9477434 - 9477357
Alignment:
Q  1 caaaaccgcctcttaagtattgcccccttttgcagttttggccgc-aggccaattttgaccaagtcaatgcacacgtgg 78  Q
    ||||| |||| ||||||||||||||  ||||||| |||||||| | || ||||||||||||||||||||||||| ||||    
T  9477434 caaaatcgccccttaagtattgccca-ttttgcaattttggcccccagaccaattttgaccaagtcaatgcacatgtgg 9477357  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 24432428 - 24432474
Alignment:
Q  24 ccccttttgcagttttggccgcaggccaattttgaccaagtcaatgc 70  Q
    ||||||||||||||||| || ||| ||||||||||||||||||||||    
T  24432428 ccccttttgcagttttgcccccagaccaattttgaccaagtcaatgc 24432474  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 44565565 - 44565524
Alignment:
Q  28 ttttgcagttttggccgcaggccaattttgaccaagtcaatgc 70  Q
    |||||||||||||| | ||||||||||||||||||||||||||    
T  44565565 ttttgcagttttggtc-caggccaattttgaccaagtcaatgc 44565524  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 15327965 - 15327920
Alignment:
Q  25 cccttttgcagttttggccgcaggccaattttgaccaagtcaatgc 70  Q
    ||||||||||||||||||| ||| |||||||| | |||||||||||    
T  15327965 cccttttgcagttttggcctcagaccaattttaatcaagtcaatgc 15327920  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 26787910 - 26787834
Alignment:
Q  1 caaaaccgcctcttaagtattgcccccttttgcagttttggccgcaggccaattttgaccaagtcaatgcacacgtgg 78  Q
    |||||||||| | ||||||||| ||  ||||||||||||| || ||| | ||||||||| || |||||||||||||||    
T  26787910 caaaaccgccccctaagtattgtcct-ttttgcagttttgtccccagactaattttgacaaaatcaatgcacacgtgg 26787834  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 47030370 - 47030422
Alignment:
Q  27 cttttgcagttttggccgcaggccaattttgaccaagtcaatgcacacgtggcc 80  Q
    |||||||||||||| || ||| ||||||||||||||||||||||  ||||||||    
T  47030370 cttttgcagttttgacc-cagaccaattttgaccaagtcaatgctgacgtggcc 47030422  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 30283709 - 30283631
Alignment:
Q  1 caaaaccgcctcttaagtattgcccccttttgcagttttggccgc--aggccaattttgaccaagtcaatgcacacgtgg 78  Q
    ||||| ||||||||||||||||| |  ||||||||||||||||    ||| |||||||||| |||| |||||||||||||    
T  30283709 caaaatcgcctcttaagtattgcaca-ttttgcagttttggccttctaggtcaattttgacaaagttaatgcacacgtgg 30283631  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 45333714 - 45333757
Alignment:
Q  26 ccttttgcagttttggccgcaggccaattttgaccaagtcaatgc 70  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    
T  45333714 ccttttgcagttttggcc-caggccaattttgaccaagtcaatgc 45333757  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 1807172 - 1807226
Alignment:
Q  25 cccttttgcagttttggccgc-aggccaattttgaccaagtcaatgcacacgtgg 78  Q
    ||||||||||||||| ||| | || ||||||||||||||||||||||||||||||    
T  1807172 cccttttgcagttttagcctcgagaccaattttgaccaagtcaatgcacacgtgg 1807226  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 1807623 - 1807570
Alignment:
Q  25 cccttttgcagttttggccgcaggccaattttgaccaagtcaatgcacacgtgg 78  Q
    ||||||||||||||| ||| |||  ||||||||||||||||||| |||||||||    
T  1807623 cccttttgcagttttagccccagatcaattttgaccaagtcaatacacacgtgg 1807570  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 36618916 - 36618856
Alignment:
Q  10 ctcttaagtattgcccccttttgcagttttggccgcaggccaattttgaccaagtcaatgca 71  Q
    ||||||||| || |||||| ||||| |||||||| ||| |||||||||||||||||||||||    
T  36618916 ctcttaagt-ttaccccctgttgcacttttggccccagaccaattttgaccaagtcaatgca 36618856  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 26466060 - 26466104
Alignment:
Q  24 ccccttttgcagttttggc-cgcaggccaattttgaccaagtcaa 67  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||    
T  26466060 ccccttttgcagttttggctcgcaggctaattttgaccaagtcaa 26466104  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 50420852 - 50420797
Alignment:
Q  14 taagtattgcccccttttgcagttttggccgcaggccaattttgaccaagtcaatgc 70  Q
    ||||||||||||  |||||||||||||||| |||| ||||||||||||| |||||||    
T  50420852 taagtattgccca-ttttgcagttttggccccaggtcaattttgaccaaatcaatgc 50420797  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 51453611 - 51453689
Alignment:
Q  1 caaaaccgcctcttaagtattgcccccttttgcagttttggccgc--aggccaattttgaccaagtcaatgcacacgtgg 78  Q
    |||||||||||| ||||||||| |   |||||||||||||||| |  ||| |||||||||| ||||||||||||||||||    
T  51453611 caaaaccgcctcctaagtattgactt-ttttgcagttttggcctcccaggtcaattttgacaaagtcaatgcacacgtgg 51453689  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 941619 - 941564
Alignment:
Q  25 cccttttgcagttttgg-ccgcaggccaattttgaccaagtcaatgcacacgtggc 79  Q
    ||||||||||||||||| || |||| ||||||||||  ||||||||||||||||||    
T  941619 cccttttgcagttttggtcctcaggtcaattttgactcagtcaatgcacacgtggc 941564  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 67
Target Start/End: Complemental strand, 37755155 - 37755116
Alignment:
Q  28 ttttgcagttttggccgcaggccaattttgaccaagtcaa 67  Q
    |||||||||||||||| || ||||||||||||||||||||    
T  37755155 ttttgcagttttggccccatgccaattttgaccaagtcaa 37755116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 159
Target Start/End: Complemental strand, 20844827 - 20844777
Alignment:
Q  109 tgagttgactcacgctgaatatttttcagcatgagttaactcatgtagaca 159  Q
    |||||| ||| |||||| |||||||||||| |||||||||||| |||||||    
T  20844827 tgagttaacttacgctggatatttttcagcgtgagttaactcacgtagaca 20844777  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 6588006 - 6588067
Alignment:
Q  23 cccccttttgcagttttggccgcaggccaattttgaccaagtcaatgcacacgtggccccca 84  Q
    |||||||||||| ||||||||  || |||||||||||||||| |||||| || |||| ||||    
T  6588006 cccccttttgcacttttggcccaagaccaattttgaccaagttaatgcatacatggcaccca 6588067  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 11413339 - 11413392
Alignment:
Q  26 ccttttgcagttttggccg-caggccaattttgaccaagtcaatgcacacgtgg 78  Q
    ||||||||||||||||||  |||  |||||||||||||||||||||| ||||||    
T  11413339 ccttttgcagttttggccctcagatcaattttgaccaagtcaatgcatacgtgg 11413392  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 29070151 - 29070090
Alignment:
Q  23 cccccttttgcagttttggccgcaggccaattttgaccaagtcaatgcacacgtggccccca 84  Q
    |||||||||||| |||||| | ||| |||||||| |||||||||||||| | ||||| ||||    
T  29070151 cccccttttgcacttttggtcccagaccaattttaaccaagtcaatgcatatgtggcaccca 29070090  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 100 - 156
Target Start/End: Original strand, 41877193 - 41877249
Alignment:
Q  100 ttttcaaaatgagttgactcacgctgaatatttttcagcatgagttaactcatgtag 156  Q
    ||||||| |||| || ||||| | |||| |||||||||| |||||||||||||||||    
T  41877193 ttttcaacatgaattaactcatgttgaacatttttcagcgtgagttaactcatgtag 41877249  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 43902614 - 43902669
Alignment:
Q  14 taagtattgcccccttttgcagttttggccgcaggccaattttgaccaagtcaatgc 70  Q
    ||||||||||||| ||||||||||||| ||  || |||||||||| |||||||||||    
T  43902614 taagtattgcccc-ttttgcagttttgccccgagaccaattttgatcaagtcaatgc 43902669  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 45 - 78
Target Start/End: Complemental strand, 1614999 - 1614966
Alignment:
Q  45 caggccaattttgaccaagtcaatgcacacgtgg 78  Q
    ||||||||||||||||||||||||||||||||||    
T  1614999 caggccaattttgaccaagtcaatgcacacgtgg 1614966  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 12799013 - 12798962
Alignment:
Q  25 cccttttgcagttttggccgc--aggccaattttgaccaagtcaatgcacac 74  Q
    ||||| ||||||||||||| |  |||||||||||||||||||||||||||||    
T  12799013 cccttctgcagttttggccccccaggccaattttgaccaagtcaatgcacac 12798962  T

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Target: scaffold0229 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 151
Target Start/End: Original strand, 21996 - 22047
Alignment:
Q  100 ttttcaaaatgagttgactcacgctgaatatttttcagcatgagttaactca 151  Q
    |||||||  |||||| |||||||||||| |||||||||| ||||||||||||    
T  21996 ttttcaacttgagttaactcacgctgaacatttttcagcgtgagttaactca 22047  T

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Target: scaffold0219 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 151
Target Start/End: Original strand, 13394 - 13428
Alignment:
Q  117 ctcacgctgaatatttttcagcatgagttaactca 151  Q
    ||||||||||| |||||||||||||||||||||||    
T  13394 ctcacgctgaacatttttcagcatgagttaactca 13428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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