View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18996_low_10 (Length: 429)
Name: NF18996_low_10
Description: NF18996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18996_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 17 - 421
Target Start/End: Original strand, 22751162 - 22751566
Alignment:
| Q |
17 |
tcagatgtggccttcattctttcatcttttgaggccatcaacttgttttgaaacttctctaggattgacaccaaaggaacatttgccaacattacaatga |
116 |
Q |
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|||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
22751162 |
tcagatgtggccttcattcttttatctcttgatgccatcaacttgttttgaaacttctctaggattgacactaaaggaacatttgccaacattacaatga |
22751261 |
T |
|
| Q |
117 |
tagttgcaacaagaccggaaattgaagcgatgccaagatttttatacaaaacaaacatagcaactaaaacctgaaaaactaccaaccaaagatcatgcaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22751262 |
tagttgcaacaagaccggaaattgaagcgatgccaagatttttatacaaaacaaacatagcaactaaaacctgaaaaactaccaaccaaagatcatgcaa |
22751361 |
T |
|
| Q |
217 |
gtgataactgaaatcgccaactctttcagcatcaacagtcatgaaattgattatctcgccgctagtgtggccttgcttggattgacaagaaagtgtcaaa |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
22751362 |
gtgataactgaaatcgccaactctttcagcatcaacagtcatgaaattgattatctcgccgctagtgtggccttgtttggattgacaagaaagtgtcaaa |
22751461 |
T |
|
| Q |
317 |
gttttatcatagataattgttaccagaagtgcttggattcttattccaattttctgtaacctgaaaacccattgcctctttgttagacactccacaacct |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22751462 |
gttttatcatagataattgttaccagaagtgcttggattcttattccaattgtctgtaacctgaaaacccattgcctctttgttagacactccacaacct |
22751561 |
T |
|
| Q |
417 |
ttgct |
421 |
Q |
| |
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||||| |
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| T |
22751562 |
ttgct |
22751566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 8e-34; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 17 - 270
Target Start/End: Original strand, 41439285 - 41439538
Alignment:
| Q |
17 |
tcagatgtggccttcattctttcatcttttgaggccatcaacttgttttgaaacttctctaggattgacaccaaaggaacatttgccaacattacaatga |
116 |
Q |
| |
|
|||||||||| |||||||||| ||| ||||| |||||||||| ||||||||||||||| | | ||| |||| ||||||||||| ||||| ||||||| |
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| T |
41439285 |
tcagatgtggtcttcattcttgtatcctttgactccatcaactttttttgaaacttctcttgtaatgatcccaatggaacatttgctaacataacaatga |
41439384 |
T |
|
| Q |
117 |
tagttgcaacaagaccggaaattgaagcgatgccaagatttttatacaaaacaaacatagcaactaaaacctgaaaaactaccaaccaaagatcatgcaa |
216 |
Q |
| |
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|||||||||||| | | | ||||||||| | ||||||||||||||||||| |||| || | | ||| || ||| |||| ||||| | |||||||| |
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| T |
41439385 |
tagttgcaacaaaagcagcaattgaagcaagtccaagatttttatacaaaattaacaatgccagtgtaacttgcaaagctactaaccacaaatcatgcat |
41439484 |
T |
|
| Q |
217 |
gtgataactgaaatcgccaactctttcagcatcaacagtcatgaaattgattat |
270 |
Q |
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|| ||||||| | |||||||||| |||||||||||||||||||||||||| |
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| T |
41439485 |
gtaccaactgaatttatcaactctttcggcatcaacagtcatgaaattgattat |
41439538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 17 - 270
Target Start/End: Original strand, 41452454 - 41452707
Alignment:
| Q |
17 |
tcagatgtggccttcattctttcatcttttgaggccatcaacttgttttgaaacttctctaggattgacaccaaaggaacatttgccaacattacaatga |
116 |
Q |
| |
|
|||||||||| |||||||||| ||| ||||| |||||||||| ||||||||||||||| | | ||| |||| ||||||||||| ||||| ||||| | |
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| T |
41452454 |
tcagatgtggtcttcattcttgtatcctttgactccatcaacttattttgaaacttctcttgcaatgatcccaatggaacatttgctaacataacaataa |
41452553 |
T |
|
| Q |
117 |
tagttgcaacaagaccggaaattgaagcgatgccaagatttttatacaaaacaaacatagcaactaaaacctgaaaaactaccaaccaaagatcatgcaa |
216 |
Q |
| |
|
|||||||||||| | | | ||||||||| | ||||||||||||||||||| |||| || | | ||| || ||| |||| ||||| | |||||||| |
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| T |
41452554 |
tagttgcaacaaaagcagcaattgaagcaagtccaagatttttatacaaaattaacaatgccagtgtaacttgcaaagctactaaccacaaatcatgcat |
41452653 |
T |
|
| Q |
217 |
gtgataactgaaatcgccaactctttcagcatcaacagtcatgaaattgattat |
270 |
Q |
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|| |||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
41452654 |
gtaccaactgaaactaccaactctttcggcatcaacagtcatgaaattgattat |
41452707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 270
Target Start/End: Complemental strand, 14371666 - 14371629
Alignment:
| Q |
233 |
ccaactctttcagcatcaacagtcatgaaattgattat |
270 |
Q |
| |
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|||||| ||||||||||||| ||||||||||||||||| |
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| T |
14371666 |
ccaactgtttcagcatcaacggtcatgaaattgattat |
14371629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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