View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18996_low_15 (Length: 351)
Name: NF18996_low_15
Description: NF18996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18996_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 345
Target Start/End: Complemental strand, 23227226 - 23226899
Alignment:
| Q |
18 |
ctaagcaagtaaaggctgagttcaggaccaccactaccaacagggttcatcatgtagaaagcttcagaatctttagacccaataaccctctcatacttag |
117 |
Q |
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| T |
23227226 |
ctaagcaagtaaaggctgagttcaggaccaccactaccaacatggttcatcatgtagaaagcttcagaatctttagacccaataaccctctcatacttag |
23227127 |
T |
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| Q |
118 |
ctctcatatacatgagctcaccttcaaactcacctccattcccactacttggcattggcaacacaccagcacccattgaaataggttcgacagctttcaa |
217 |
Q |
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| T |
23227126 |
ctctcatatacatgagctcaccttcaaactcacctccattcccactacttggcattggcaacacaccagcacccattgaaataggttccacagctttcaa |
23227027 |
T |
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| Q |
218 |
tatcttccattcctctgatccacattcatgcctataagcataaccacattttcttccattacaataagacctccaaattggttcctcaagcaacttcaaa |
317 |
Q |
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| T |
23227026 |
tatcttccattcctctgatccacattcatgcctataagcataaccacattttcttccattacaataagacctccaaattggttcctcaagcaacttcaaa |
23226927 |
T |
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| Q |
318 |
ctctttctccctcctcctttcttctcac |
345 |
Q |
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| T |
23226926 |
ctctttctccctcctcctttcttctcac |
23226899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 139
Target Start/End: Original strand, 24009490 - 24009571
Alignment:
| Q |
58 |
cagggttcatcatgtagaaagcttcagaatctttagacccaataaccctctcatacttagctctcatatacatgagctcacc |
139 |
Q |
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| T |
24009490 |
caggattcatcatatagaaagcttcagagtctctagacccaacaattctctcaaactttgccctcatgtacataagttcacc |
24009571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 46089875 - 46089803
Alignment:
| Q |
58 |
cagggttcatcatgtagaaagcttcagaatctttagacccaataaccctctcatacttagctctcatatacat |
130 |
Q |
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|||| |||||||| |||||||||||||||||| |||| |||| || |||||| || |||||||||||||||| |
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| T |
46089875 |
caggattcatcatatagaaagcttcagaatctctagagccaacaattctctcaaacctagctctcatatacat |
46089803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 222
Target Start/End: Complemental strand, 46089769 - 46089720
Alignment:
| Q |
173 |
tggcaacacaccagcacccattgaaataggttcgacagctttcaatatct |
222 |
Q |
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| T |
46089769 |
tggcaaaacaccagcacccattgaaataggctcaacagctttcaaaatct |
46089720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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