View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18996_low_16 (Length: 350)
Name: NF18996_low_16
Description: NF18996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18996_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 14 - 333
Target Start/End: Complemental strand, 18274088 - 18273769
Alignment:
| Q |
14 |
atcatgagactcctccaccttagttttcatttggaatattagtttgtatgtatgatgcgtggtcctataagaaccagagtttcgcaatacagtaaagttt |
113 |
Q |
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| T |
18274088 |
atcatgggactcctccaccttagttttcatttggaatattagtttgtatgtatgatgcgtagtcctataagcaccagagtttagcaagacagtaaagttt |
18273989 |
T |
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| Q |
114 |
gataacttgtaaacttttccctcaatcaatttgtgctgaaaaagatacatcaactgcttgggaatagtagcatgtattttcaccccattttgatcaataa |
213 |
Q |
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| T |
18273988 |
gataacttgtaaacttttccctcaatcaatttgtgctgaaaaagatacatcaactgcttgggaatagtagcatgtattttcaccccgttttgatcaataa |
18273889 |
T |
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| Q |
214 |
gcaccatttcaatagaggtaaacaatggaacttcccacaacctaataactcgaacaacaaatctccaggcatcagcgtttctaccaggaacaacatcacc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
18273888 |
gcaccatttcaatagaggtaaacaatggaacttcccacaacctaataactcgaacaacaaatctccaggcatcagcgtttctaccaggaacaacatcatc |
18273789 |
T |
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| Q |
314 |
caaattctgtatagacttat |
333 |
Q |
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|||||| ||||||||||||| |
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| T |
18273788 |
caaattatgtatagacttat |
18273769 |
T |
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