View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18996_low_26 (Length: 281)

Name: NF18996_low_26
Description: NF18996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18996_low_26
NF18996_low_26
[»] chr5 (2 HSPs)
chr5 (171-270)||(23425735-23425834)
chr5 (36-89)||(23425917-23425970)
[»] chr2 (1 HSPs)
chr2 (171-262)||(29486472-29486560)


Alignment Details
Target: chr5 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 171 - 270
Target Start/End: Complemental strand, 23425834 - 23425735
Alignment:
Q  171 ggatcaacaagtacaataggaagatagcaaggctgatgaaggtaaactacacttccaaacgacctctccaagaaacaagcagcaacacaaacataggtct 270  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  23425834 ggatcaacaagcacaataggaagatagcaaggctgatgaaggtaaacaacactgccaaacgatctctccaagaaacaagcagcaacacaaacataggtct 23425735  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 36 - 89
Target Start/End: Complemental strand, 23425970 - 23425917
Alignment:
Q  36 acgggttagaatgacaccaaaccacctaaaaagatataaagtctgatgccaccc 89  Q
    |||||||| |||||| | ||||||||||||||||||||||||||||||||||||    
T  23425970 acgggttaaaatgacgctaaaccacctaaaaagatataaagtctgatgccaccc 23425917  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 171 - 262
Target Start/End: Complemental strand, 29486560 - 29486472
Alignment:
Q  171 ggatcaacaagtacaataggaagatagcaaggctgatgaaggtaaactacacttccaaacgacctctccaagaaacaagcagcaacacaaac 262  Q
    |||||| ||| ||||| || ||||||||||||||||   | |||||||||||| |||||| ||||||||||||||||| |||||||||||||    
T  29486560 ggatcagcaaatacaagagcaagatagcaaggctga---aagtaaactacactaccaaaccacctctccaagaaacaaacagcaacacaaac 29486472  T

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