View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18996_low_27 (Length: 279)
Name: NF18996_low_27
Description: NF18996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18996_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 12 - 259
Target Start/End: Complemental strand, 4197123 - 4196872
Alignment:
| Q |
12 |
acagatacagatcaccaaaaggtgaagcattaaaaaatcagtaagtgtaaatgtaaactgtttccaccctttgaagtgtaaccaaccccattttactttt |
111 |
Q |
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| T |
4197123 |
acagatacagatcaccaaaaggtgaagcattaaaaaatcagtaagtgtaaatgtaaactgtttccaccctttgaagtgtaaccaaccccattttactttt |
4197024 |
T |
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| Q |
112 |
tagttcacgagacaacttaaactgtagaaaagatgtgaaatttctttagtagatttcaatag----aagnnnnnnnnntcttagtttcccacatcatata |
207 |
Q |
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| T |
4197023 |
tagttcacgagacaacttaaacggtagaaaagatgtgaaatttctttagtagatttcaatagaaaaaaaaaaaaaaaatcttagtttcccacatcatata |
4196924 |
T |
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| Q |
208 |
agttccaattatacaagcgttgtctgttttctgtctagaaacaggatatcta |
259 |
Q |
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| T |
4196923 |
agttccaattatacaagcgttgtctgttttctgtctagaaacaggatatcta |
4196872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 170
Target Start/End: Complemental strand, 4188253 - 4188218
Alignment:
| Q |
135 |
gtagaaaagatgtgaaatttctttagtagatttcaa |
170 |
Q |
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| T |
4188253 |
gtagaaaagatgtgaattttctttagtagatttcaa |
4188218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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