View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18996_low_28 (Length: 277)
Name: NF18996_low_28
Description: NF18996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18996_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 16 - 261
Target Start/End: Original strand, 19642831 - 19643076
Alignment:
| Q |
16 |
atgaccctttaccccaaatactcccattcctccattccccaatataatatttctcatctttccactcatatctcccttgtccatcctgcaaacctcttct |
115 |
Q |
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| T |
19642831 |
atgaccctttaccccaaatactcccattcctccattccccaatataatatttctcatctttccactcatatctcccttgtccatcctgcaaacctcttct |
19642930 |
T |
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| Q |
116 |
ccattctccctcatacttatctccattcgaataactcgtctcaccatgaccatgtttcaaattcattacccattgtcccttataagtatccccattagta |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
19642931 |
ccattctccctcatacttatctccattcgaataactcgtctcaccatgaccatgtttcaaattcatcacccattgtcctttataagtatccccattagta |
19643030 |
T |
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| Q |
216 |
gaagtgtatgcacctattccatccatataaccactcttgaactccc |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19643031 |
gaagtgtatgcacctattccatccatataaccactcttgaactccc |
19643076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 212
Target Start/End: Complemental strand, 35256905 - 35256709
Alignment:
| Q |
16 |
atgaccctttaccccaaatactcccattcctccattccccaatataatatttctcatctttccactcatatctcccttgtccatcctgcaaacctcttct |
115 |
Q |
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|||| |||||||||||||| |||||||| ||||||| |||||||||| || |||| |||| ||||| ||||||| |||||| |||| ||||| || |
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| T |
35256905 |
atgatcctttaccccaaattatcccattcttccattcaccaatataatgactcatatctctccattcatacctcccttttccatcttgcacccctctcct |
35256806 |
T |
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| Q |
116 |
ccattctccctcatacttatctccattcgaataactcgtctcaccatgaccatgtttcaaattcattacccattgtcccttataagtatccccatta |
212 |
Q |
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||| || || |||||| ||| |||||| ||||||| | | |||||||||||||| |||||||| ||||||||||| ||||| || || |||||| |
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| T |
35256805 |
ccaatcaccttcataccaatcaccattcacataactcttatacccatgaccatgttttaaattcatcacccattgtcctttatatgtctcaccatta |
35256709 |
T |
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